miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 9902 0.74 0.699962
Target:  5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3'
miRNA:   3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 10986 0.66 0.978798
Target:  5'- --aGCAGgcgGCGcuGCcGGUGACGggGg -3'
miRNA:   3'- ccaCGUCaa-CGU--CGuCCACUGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 11362 0.66 0.984946
Target:  5'- uGGcGCAGgcGCugcgcgucaGGCAGGUGGgcaagcuggUGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCG---------UCGUCCACU---------GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 14030 0.66 0.978798
Target:  5'- aGG-GCAGggaGCAgGCGGGggcaGGCGcAAGCg -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGUCCa---CUGC-UUCG- -5'
28854 5' -52.5 NC_006146.1 + 18959 0.67 0.966022
Target:  5'- uGGUGCgccagcggccccuagAGaggGCGGCAGG-GcCGGAGCc -3'
miRNA:   3'- -CCACG---------------UCaa-CGUCGUCCaCuGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 19136 0.67 0.967939
Target:  5'- uGG-GCAGgcGCA--AGGcUGACGggGCc -3'
miRNA:   3'- -CCaCGUCaaCGUcgUCC-ACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 33218 0.71 0.857759
Target:  5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 33340 0.67 0.9647
Target:  5'- gGGUGCuccGggGCAGcCGGGUGGCcgccGGUg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 33998 0.68 0.949464
Target:  5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3'
miRNA:   3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 38396 0.68 0.953625
Target:  5'- uGGUGCGGaUGCaugGGguGGUGGCaucuggGAuuAGCg -3'
miRNA:   3'- -CCACGUCaACG---UCguCCACUG------CU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 38811 0.66 0.981024
Target:  5'- gGGUGCAcaucUGCAGcCAGGcccUGAgccUGggGCa -3'
miRNA:   3'- -CCACGUca--ACGUC-GUCC---ACU---GCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 39271 0.67 0.974579
Target:  5'- gGGUGUGGgccccggacucgagaCGGCAGGUGGCagcaGAGGCc -3'
miRNA:   3'- -CCACGUCaac------------GUCGUCCACUG----CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 39773 0.66 0.986659
Target:  5'- --cGCAGacGCGGCAGGUG-Cu-GGCu -3'
miRNA:   3'- ccaCGUCaaCGUCGUCCACuGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 40011 0.71 0.865524
Target:  5'- cGGUGUGGgcGUAGCAGGgGGCcugcugGggGCc -3'
miRNA:   3'- -CCACGUCaaCGUCGUCCaCUG------CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 40456 0.7 0.880392
Target:  5'- gGGUGCGGcaaugGCcuGGUGGGUGAaggGggGCa -3'
miRNA:   3'- -CCACGUCaa---CG--UCGUCCACUg--CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 41466 0.7 0.880392
Target:  5'- --gGCGGUgGCAGCGgcGGUGAUGuuGCu -3'
miRNA:   3'- ccaCGUCAaCGUCGU--CCACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 41484 0.66 0.984946
Target:  5'- cGUGCAGaUGCGGgAGuuuGUGGucUGggGCa -3'
miRNA:   3'- cCACGUCaACGUCgUC---CACU--GCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 42847 0.72 0.78863
Target:  5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3'
miRNA:   3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5'
28854 5' -52.5 NC_006146.1 + 43354 0.7 0.900961
Target:  5'- aGGcGCAGcccgugGCAGgGGGUGGCuuAGCg -3'
miRNA:   3'- -CCaCGUCaa----CGUCgUCCACUGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 44807 0.72 0.785827
Target:  5'- uGGUGU-GUuucugaggccccgcUGCGGCuGGUGACGGAGg -3'
miRNA:   3'- -CCACGuCA--------------ACGUCGuCCACUGCUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.