miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 149831 0.79 0.465686
Target:  5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3'
miRNA:   3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90196 0.69 0.919357
Target:  5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3'
miRNA:   3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 123327 0.69 0.935523
Target:  5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3'
miRNA:   3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5'
28854 5' -52.5 NC_006146.1 + 47245 0.66 0.986659
Target:  5'- uGGcGCGGgucgacGUGGCcccuggcccGGGUGACGAGGUc -3'
miRNA:   3'- -CCaCGUCaa----CGUCG---------UCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 42847 0.72 0.78863
Target:  5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3'
miRNA:   3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5'
28854 5' -52.5 NC_006146.1 + 90081 0.72 0.797877
Target:  5'- cGGUGCAGgggggaGCAGUggAGGcaGCGGAGCa -3'
miRNA:   3'- -CCACGUCaa----CGUCG--UCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 46068 0.72 0.833219
Target:  5'- aGUGCcauAGcUGCuGCAGGgccucgggGGCGAAGCa -3'
miRNA:   3'- cCACG---UCaACGuCGUCCa-------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 158621 0.72 0.833219
Target:  5'- uGGUuCAGcUGcCAGUAGGUGuaGCGggGCu -3'
miRNA:   3'- -CCAcGUCaAC-GUCGUCCAC--UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 93887 0.71 0.864758
Target:  5'- aGGgggGCGGaauUUGCGGCAGGgggGGCcagcacgGAGGCg -3'
miRNA:   3'- -CCa--CGUC---AACGUCGUCCa--CUG-------CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56848 0.7 0.907338
Target:  5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3'
miRNA:   3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 53844 0.7 0.907338
Target:  5'- aGGUGUGGUcccggagGCGGUAGGcGACGcuGGCc -3'
miRNA:   3'- -CCACGUCAa------CGUCGUCCaCUGCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 33218 0.71 0.857759
Target:  5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 166680 0.75 0.648167
Target:  5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3'
miRNA:   3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 90114 0.7 0.907338
Target:  5'- aGGagGCAGUggaGCAGgAGGcaGCGGAGCa -3'
miRNA:   3'- -CCa-CGUCAa--CGUCgUCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 44807 0.72 0.785827
Target:  5'- uGGUGU-GUuucugaggccccgcUGCGGCuGGUGACGGAGg -3'
miRNA:   3'- -CCACGuCA--------------ACGUCGuCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 89461 0.72 0.836595
Target:  5'- aGGUGCagcgggaguuuucugGGUUGCgGGUAaccGGUGAgGAGGCa -3'
miRNA:   3'- -CCACG---------------UCAACG-UCGU---CCACUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 66358 0.7 0.907338
Target:  5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3'
miRNA:   3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5'
28854 5' -52.5 NC_006146.1 + 123212 0.69 0.919357
Target:  5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3'
miRNA:   3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56354 0.72 0.78863
Target:  5'- cGGaGCAGguaGUAgGCGuGGUGGCGGAGCa -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGU-CCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 142548 0.72 0.815895
Target:  5'- uGGuUGCGG-UGCAGCcuAGGcuaGGCGGAGCc -3'
miRNA:   3'- -CC-ACGUCaACGUCG--UCCa--CUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.