miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 59541 0.7 0.887484
Target:  5'- aGGUGgGGgUGCAGCGuGGcGAUGGAGg -3'
miRNA:   3'- -CCACgUCaACGUCGU-CCaCUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 77912 0.68 0.940415
Target:  5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3'
miRNA:   3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 55864 0.68 0.940415
Target:  5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3'
miRNA:   3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5'
28854 5' -52.5 NC_006146.1 + 71643 0.69 0.935523
Target:  5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3'
miRNA:   3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 74033 0.69 0.930383
Target:  5'- cGGaUGCAGUcuCGGCGGcUGACGcGGCa -3'
miRNA:   3'- -CC-ACGUCAacGUCGUCcACUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 64180 0.69 0.930383
Target:  5'- uGG-GUGGggGCAGCaggaguugcaAGGUGucGCGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCGUCG----------UCCAC--UGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 110582 0.69 0.924994
Target:  5'- --aGCGGUUGCGGUGGGUcuCGAccgucaGGCa -3'
miRNA:   3'- ccaCGUCAACGUCGUCCAcuGCU------UCG- -5'
28854 5' -52.5 NC_006146.1 + 115404 0.7 0.894342
Target:  5'- cGUGCAGgagGCAGCuGGcGGCcGGGCc -3'
miRNA:   3'- cCACGUCaa-CGUCGuCCaCUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 128086 0.7 0.887484
Target:  5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3'
miRNA:   3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 83188 0.68 0.944608
Target:  5'- aGGUGCA---GCAGCugggagaGGGUGGCuauGGAGCc -3'
miRNA:   3'- -CCACGUcaaCGUCG-------UCCACUG---CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 110881 0.68 0.945061
Target:  5'- cGGgcuCGGgcGCAgGCGGG-GACGggGCc -3'
miRNA:   3'- -CCac-GUCaaCGU-CGUCCaCUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 140115 0.67 0.9647
Target:  5'- aGGUGguGgaagAGgGGGUGGCGGAGg -3'
miRNA:   3'- -CCACguCaacgUCgUCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 11362 0.66 0.984946
Target:  5'- uGGcGCAGgcGCugcgcgucaGGCAGGUGGgcaagcuggUGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCG---------UCGUCCACU---------GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 88074 0.66 0.981024
Target:  5'- cGGUGCAGUUGCAcccGUGGucaugcuaucuuGUaACGggGUa -3'
miRNA:   3'- -CCACGUCAACGU---CGUC------------CAcUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 14030 0.66 0.978798
Target:  5'- aGG-GCAGggaGCAgGCGGGggcaGGCGcAAGCg -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGUCCa---CUGC-UUCG- -5'
28854 5' -52.5 NC_006146.1 + 50726 0.67 0.976384
Target:  5'- --gGC-GUUG-AGCGGGggcGACGggGCg -3'
miRNA:   3'- ccaCGuCAACgUCGUCCa--CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 101852 0.67 0.967939
Target:  5'- cGG-GCuGccGCAccaCGGGUGGCGggGCg -3'
miRNA:   3'- -CCaCGuCaaCGUc--GUCCACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 19136 0.67 0.967939
Target:  5'- uGG-GCAGgcGCA--AGGcUGACGggGCc -3'
miRNA:   3'- -CCaCGUCaaCGUcgUCC-ACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 18959 0.67 0.966022
Target:  5'- uGGUGCgccagcggccccuagAGaggGCGGCAGG-GcCGGAGCc -3'
miRNA:   3'- -CCACG---------------UCaa-CGUCGUCCaCuGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 112735 0.67 0.9647
Target:  5'- cGUGUAca---GGCAGGUGGuCGAGGCg -3'
miRNA:   3'- cCACGUcaacgUCGUCCACU-GCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.