Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28854 | 5' | -52.5 | NC_006146.1 | + | 51132 | 1.15 | 0.002693 |
Target: 5'- gGGUGCAGUUGCAGCAGGUGACGAAGCg -3' miRNA: 3'- -CCACGUCAACGUCGUCCACUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 149831 | 0.79 | 0.465686 |
Target: 5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3' miRNA: 3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 166680 | 0.75 | 0.648167 |
Target: 5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3' miRNA: 3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 9902 | 0.74 | 0.699962 |
Target: 5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3' miRNA: 3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 44807 | 0.72 | 0.785827 |
Target: 5'- uGGUGU-GUuucugaggccccgcUGCGGCuGGUGACGGAGg -3' miRNA: 3'- -CCACGuCA--------------ACGUCGuCCACUGCUUCg -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 100285 | 0.72 | 0.788629 |
Target: 5'- uGGgGCGGagGCAGCAGaGgccGugGAGGCa -3' miRNA: 3'- -CCaCGUCaaCGUCGUC-Ca--CugCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 56354 | 0.72 | 0.78863 |
Target: 5'- cGGaGCAGguaGUAgGCGuGGUGGCGGAGCa -3' miRNA: 3'- -CCaCGUCaa-CGU-CGU-CCACUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 42847 | 0.72 | 0.78863 |
Target: 5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3' miRNA: 3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 90081 | 0.72 | 0.797877 |
Target: 5'- cGGUGCAGgggggaGCAGUggAGGcaGCGGAGCa -3' miRNA: 3'- -CCACGUCaa----CGUCG--UCCacUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 142548 | 0.72 | 0.815895 |
Target: 5'- uGGuUGCGG-UGCAGCcuAGGcuaGGCGGAGCc -3' miRNA: 3'- -CC-ACGUCaACGUCG--UCCa--CUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 46068 | 0.72 | 0.833219 |
Target: 5'- aGUGCcauAGcUGCuGCAGGgccucgggGGCGAAGCa -3' miRNA: 3'- cCACG---UCaACGuCGUCCa-------CUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 158621 | 0.72 | 0.833219 |
Target: 5'- uGGUuCAGcUGcCAGUAGGUGuaGCGggGCu -3' miRNA: 3'- -CCAcGUCaAC-GUCGUCCAC--UGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 89461 | 0.72 | 0.836595 |
Target: 5'- aGGUGCagcgggaguuuucugGGUUGCgGGUAaccGGUGAgGAGGCa -3' miRNA: 3'- -CCACG---------------UCAACG-UCGU---CCACUgCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 33218 | 0.71 | 0.857759 |
Target: 5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3' miRNA: 3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 93887 | 0.71 | 0.864758 |
Target: 5'- aGGgggGCGGaauUUGCGGCAGGgggGGCcagcacgGAGGCg -3' miRNA: 3'- -CCa--CGUC---AACGUCGUCCa--CUG-------CUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40011 | 0.71 | 0.865524 |
Target: 5'- cGGUGUGGgcGUAGCAGGgGGCcugcugGggGCc -3' miRNA: 3'- -CCACGUCaaCGUCGUCCaCUG------CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40456 | 0.7 | 0.880392 |
Target: 5'- gGGUGCGGcaaugGCcuGGUGGGUGAaggGggGCa -3' miRNA: 3'- -CCACGUCaa---CG--UCGUCCACUg--CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 41466 | 0.7 | 0.880392 |
Target: 5'- --gGCGGUgGCAGCGgcGGUGAUGuuGCu -3' miRNA: 3'- ccaCGUCAaCGUCGU--CCACUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 128086 | 0.7 | 0.887484 |
Target: 5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3' miRNA: 3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 59541 | 0.7 | 0.887484 |
Target: 5'- aGGUGgGGgUGCAGCGuGGcGAUGGAGg -3' miRNA: 3'- -CCACgUCaACGUCGU-CCaCUGCUUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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