miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 51132 1.15 0.002693
Target:  5'- gGGUGCAGUUGCAGCAGGUGACGAAGCg -3'
miRNA:   3'- -CCACGUCAACGUCGUCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 149831 0.79 0.465686
Target:  5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3'
miRNA:   3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 166680 0.75 0.648167
Target:  5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3'
miRNA:   3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 9902 0.74 0.699962
Target:  5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3'
miRNA:   3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 44807 0.72 0.785827
Target:  5'- uGGUGU-GUuucugaggccccgcUGCGGCuGGUGACGGAGg -3'
miRNA:   3'- -CCACGuCA--------------ACGUCGuCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 100285 0.72 0.788629
Target:  5'- uGGgGCGGagGCAGCAGaGgccGugGAGGCa -3'
miRNA:   3'- -CCaCGUCaaCGUCGUC-Ca--CugCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56354 0.72 0.78863
Target:  5'- cGGaGCAGguaGUAgGCGuGGUGGCGGAGCa -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGU-CCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 42847 0.72 0.78863
Target:  5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3'
miRNA:   3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5'
28854 5' -52.5 NC_006146.1 + 90081 0.72 0.797877
Target:  5'- cGGUGCAGgggggaGCAGUggAGGcaGCGGAGCa -3'
miRNA:   3'- -CCACGUCaa----CGUCG--UCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 142548 0.72 0.815895
Target:  5'- uGGuUGCGG-UGCAGCcuAGGcuaGGCGGAGCc -3'
miRNA:   3'- -CC-ACGUCaACGUCG--UCCa--CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 46068 0.72 0.833219
Target:  5'- aGUGCcauAGcUGCuGCAGGgccucgggGGCGAAGCa -3'
miRNA:   3'- cCACG---UCaACGuCGUCCa-------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 158621 0.72 0.833219
Target:  5'- uGGUuCAGcUGcCAGUAGGUGuaGCGggGCu -3'
miRNA:   3'- -CCAcGUCaAC-GUCGUCCAC--UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 89461 0.72 0.836595
Target:  5'- aGGUGCagcgggaguuuucugGGUUGCgGGUAaccGGUGAgGAGGCa -3'
miRNA:   3'- -CCACG---------------UCAACG-UCGU---CCACUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 33218 0.71 0.857759
Target:  5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 93887 0.71 0.864758
Target:  5'- aGGgggGCGGaauUUGCGGCAGGgggGGCcagcacgGAGGCg -3'
miRNA:   3'- -CCa--CGUC---AACGUCGUCCa--CUG-------CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 40011 0.71 0.865524
Target:  5'- cGGUGUGGgcGUAGCAGGgGGCcugcugGggGCc -3'
miRNA:   3'- -CCACGUCaaCGUCGUCCaCUG------CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 40456 0.7 0.880392
Target:  5'- gGGUGCGGcaaugGCcuGGUGGGUGAaggGggGCa -3'
miRNA:   3'- -CCACGUCaa---CG--UCGUCCACUg--CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 41466 0.7 0.880392
Target:  5'- --gGCGGUgGCAGCGgcGGUGAUGuuGCu -3'
miRNA:   3'- ccaCGUCAaCGUCGU--CCACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 128086 0.7 0.887484
Target:  5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3'
miRNA:   3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 59541 0.7 0.887484
Target:  5'- aGGUGgGGgUGCAGCGuGGcGAUGGAGg -3'
miRNA:   3'- -CCACgUCaACGUCGU-CCaCUGCUUCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.