Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28854 | 5' | -52.5 | NC_006146.1 | + | 115404 | 0.7 | 0.894342 |
Target: 5'- cGUGCAGgagGCAGCuGGcGGCcGGGCc -3' miRNA: 3'- cCACGUCaa-CGUCGuCCaCUGcUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 43354 | 0.7 | 0.900961 |
Target: 5'- aGGcGCAGcccgugGCAGgGGGUGGCuuAGCg -3' miRNA: 3'- -CCaCGUCaa----CGUCgUCCACUGcuUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 90114 | 0.7 | 0.907338 |
Target: 5'- aGGagGCAGUggaGCAGgAGGcaGCGGAGCa -3' miRNA: 3'- -CCa-CGUCAa--CGUCgUCCacUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 66358 | 0.7 | 0.907338 |
Target: 5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3' miRNA: 3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 56848 | 0.7 | 0.907338 |
Target: 5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3' miRNA: 3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 53844 | 0.7 | 0.907338 |
Target: 5'- aGGUGUGGUcccggagGCGGUAGGcGACGcuGGCc -3' miRNA: 3'- -CCACGUCAa------CGUCGUCCaCUGCu-UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 123212 | 0.69 | 0.919357 |
Target: 5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3' miRNA: 3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 90196 | 0.69 | 0.919357 |
Target: 5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3' miRNA: 3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 110582 | 0.69 | 0.924994 |
Target: 5'- --aGCGGUUGCGGUGGGUcuCGAccgucaGGCa -3' miRNA: 3'- ccaCGUCAACGUCGUCCAcuGCU------UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 64180 | 0.69 | 0.930383 |
Target: 5'- uGG-GUGGggGCAGCaggaguugcaAGGUGucGCGGAGCu -3' miRNA: 3'- -CCaCGUCaaCGUCG----------UCCAC--UGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 74033 | 0.69 | 0.930383 |
Target: 5'- cGGaUGCAGUcuCGGCGGcUGACGcGGCa -3' miRNA: 3'- -CC-ACGUCAacGUCGUCcACUGCuUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 71643 | 0.69 | 0.935523 |
Target: 5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3' miRNA: 3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 57354 | 0.69 | 0.935523 |
Target: 5'- gGGUGuCGGUgagggaggcUGCGGC-GGUGGCGccgguGGGCu -3' miRNA: 3'- -CCAC-GUCA---------ACGUCGuCCACUGC-----UUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 123327 | 0.69 | 0.935523 |
Target: 5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3' miRNA: 3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 55864 | 0.68 | 0.940415 |
Target: 5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3' miRNA: 3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 77912 | 0.68 | 0.940415 |
Target: 5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3' miRNA: 3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 55289 | 0.68 | 0.943694 |
Target: 5'- --cGCGGUggGCAGCAGccggaaaaagugcagGGCGAAGCc -3' miRNA: 3'- ccaCGUCAa-CGUCGUCca-------------CUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 83188 | 0.68 | 0.944608 |
Target: 5'- aGGUGCA---GCAGCugggagaGGGUGGCuauGGAGCc -3' miRNA: 3'- -CCACGUcaaCGUCG-------UCCACUG---CUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 110881 | 0.68 | 0.945061 |
Target: 5'- cGGgcuCGGgcGCAgGCGGG-GACGggGCc -3' miRNA: 3'- -CCac-GUCaaCGU-CGUCCaCUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 33998 | 0.68 | 0.949464 |
Target: 5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3' miRNA: 3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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