miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 116521 0.67 0.96794
Target:  5'- uGGUGCAGgc-CGGUAGGaaGACGuAGUa -3'
miRNA:   3'- -CCACGUCaacGUCGUCCa-CUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 19136 0.67 0.967939
Target:  5'- uGG-GCAGgcGCA--AGGcUGACGggGCc -3'
miRNA:   3'- -CCaCGUCaaCGUcgUCC-ACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 101852 0.67 0.967939
Target:  5'- cGG-GCuGccGCAccaCGGGUGGCGggGCg -3'
miRNA:   3'- -CCaCGuCaaCGUc--GUCCACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 18959 0.67 0.966022
Target:  5'- uGGUGCgccagcggccccuagAGaggGCGGCAGG-GcCGGAGCc -3'
miRNA:   3'- -CCACG---------------UCaa-CGUCGUCCaCuGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 59045 0.67 0.9647
Target:  5'- cGGUGaGGgcGCAGCGGGccgacacgcagGGCGAcgAGCu -3'
miRNA:   3'- -CCACgUCaaCGUCGUCCa----------CUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 167304 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 90027 0.67 0.9647
Target:  5'- aGGUGCAGggggaagcggUGgAGCAGGagguggugcugGAgGGAGCc -3'
miRNA:   3'- -CCACGUCa---------ACgUCGUCCa----------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 68743 0.67 0.9647
Target:  5'- gGGUGguGgagGCc-CAGGUGGCcAAGCu -3'
miRNA:   3'- -CCACguCaa-CGucGUCCACUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 45921 0.67 0.9647
Target:  5'- cGGUGaccgUGCcGUAGGUGgACGggGUc -3'
miRNA:   3'- -CCACgucaACGuCGUCCAC-UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 112735 0.67 0.9647
Target:  5'- cGUGUAca---GGCAGGUGGuCGAGGCg -3'
miRNA:   3'- cCACGUcaacgUCGUCCACU-GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 140115 0.67 0.9647
Target:  5'- aGGUGguGgaagAGgGGGUGGCGGAGg -3'
miRNA:   3'- -CCACguCaacgUCgUCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 169168 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 168236 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 99144 0.67 0.9647
Target:  5'- ---aCAGggGCuccagcgaccGGCAGGUGGCGGAGg -3'
miRNA:   3'- ccacGUCaaCG----------UCGUCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 33340 0.67 0.9647
Target:  5'- gGGUGCuccGggGCAGcCGGGUGGCcgccGGUg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 47991 0.67 0.9647
Target:  5'- gGGU-CAGagGUGGCuGGUGGCGGgaGGCu -3'
miRNA:   3'- -CCAcGUCaaCGUCGuCCACUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 52758 0.68 0.953625
Target:  5'- --cGCAGUUGCugacGCAcuGGaugccGGCGAAGCg -3'
miRNA:   3'- ccaCGUCAACGu---CGU--CCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 38396 0.68 0.953625
Target:  5'- uGGUGCGGaUGCaugGGguGGUGGCaucuggGAuuAGCg -3'
miRNA:   3'- -CCACGUCaACG---UCguCCACUG------CU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 166999 0.68 0.953625
Target:  5'- gGGcGCGGUUgaaGguGCAcguGGUGGCuGggGCa -3'
miRNA:   3'- -CCaCGUCAA---CguCGU---CCACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 33998 0.68 0.949464
Target:  5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3'
miRNA:   3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.