miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 110881 0.68 0.945061
Target:  5'- cGGgcuCGGgcGCAgGCGGG-GACGggGCc -3'
miRNA:   3'- -CCac-GUCaaCGU-CGUCCaCUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 83188 0.68 0.944608
Target:  5'- aGGUGCA---GCAGCugggagaGGGUGGCuauGGAGCc -3'
miRNA:   3'- -CCACGUcaaCGUCG-------UCCACUG---CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 55289 0.68 0.943694
Target:  5'- --cGCGGUggGCAGCAGccggaaaaagugcagGGCGAAGCc -3'
miRNA:   3'- ccaCGUCAa-CGUCGUCca-------------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 77912 0.68 0.940415
Target:  5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3'
miRNA:   3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 55864 0.68 0.940415
Target:  5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3'
miRNA:   3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5'
28854 5' -52.5 NC_006146.1 + 57354 0.69 0.935523
Target:  5'- gGGUGuCGGUgagggaggcUGCGGC-GGUGGCGccgguGGGCu -3'
miRNA:   3'- -CCAC-GUCA---------ACGUCGuCCACUGC-----UUCG- -5'
28854 5' -52.5 NC_006146.1 + 123327 0.69 0.935523
Target:  5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3'
miRNA:   3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5'
28854 5' -52.5 NC_006146.1 + 71643 0.69 0.935523
Target:  5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3'
miRNA:   3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 64180 0.69 0.930383
Target:  5'- uGG-GUGGggGCAGCaggaguugcaAGGUGucGCGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCGUCG----------UCCAC--UGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 74033 0.69 0.930383
Target:  5'- cGGaUGCAGUcuCGGCGGcUGACGcGGCa -3'
miRNA:   3'- -CC-ACGUCAacGUCGUCcACUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 110582 0.69 0.924994
Target:  5'- --aGCGGUUGCGGUGGGUcuCGAccgucaGGCa -3'
miRNA:   3'- ccaCGUCAACGUCGUCCAcuGCU------UCG- -5'
28854 5' -52.5 NC_006146.1 + 123212 0.69 0.919357
Target:  5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3'
miRNA:   3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90196 0.69 0.919357
Target:  5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3'
miRNA:   3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56848 0.7 0.907338
Target:  5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3'
miRNA:   3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 66358 0.7 0.907338
Target:  5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3'
miRNA:   3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5'
28854 5' -52.5 NC_006146.1 + 90114 0.7 0.907338
Target:  5'- aGGagGCAGUggaGCAGgAGGcaGCGGAGCa -3'
miRNA:   3'- -CCa-CGUCAa--CGUCgUCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 53844 0.7 0.907338
Target:  5'- aGGUGUGGUcccggagGCGGUAGGcGACGcuGGCc -3'
miRNA:   3'- -CCACGUCAa------CGUCGUCCaCUGCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 43354 0.7 0.900961
Target:  5'- aGGcGCAGcccgugGCAGgGGGUGGCuuAGCg -3'
miRNA:   3'- -CCaCGUCaa----CGUCgUCCACUGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 115404 0.7 0.894342
Target:  5'- cGUGCAGgagGCAGCuGGcGGCcGGGCc -3'
miRNA:   3'- cCACGUCaa-CGUCGuCCaCUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 128086 0.7 0.887484
Target:  5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3'
miRNA:   3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.