miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 68743 0.67 0.9647
Target:  5'- gGGUGguGgagGCc-CAGGUGGCcAAGCu -3'
miRNA:   3'- -CCACguCaa-CGucGUCCACUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 166999 0.68 0.953625
Target:  5'- gGGcGCGGUUgaaGguGCAcguGGUGGCuGggGCa -3'
miRNA:   3'- -CCaCGUCAA---CguCGU---CCACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 57354 0.69 0.935523
Target:  5'- gGGUGuCGGUgagggaggcUGCGGC-GGUGGCGccgguGGGCu -3'
miRNA:   3'- -CCAC-GUCA---------ACGUCGuCCACUGC-----UUCG- -5'
28854 5' -52.5 NC_006146.1 + 90196 0.69 0.919357
Target:  5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3'
miRNA:   3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 112951 0.67 0.973775
Target:  5'- --cGUAGUgGCAGU-GGUGAUGcAGCa -3'
miRNA:   3'- ccaCGUCAaCGUCGuCCACUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 45921 0.67 0.9647
Target:  5'- cGGUGaccgUGCcGUAGGUGgACGggGUc -3'
miRNA:   3'- -CCACgucaACGuCGUCCAC-UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 38396 0.68 0.953625
Target:  5'- uGGUGCGGaUGCaugGGguGGUGGCaucuggGAuuAGCg -3'
miRNA:   3'- -CCACGUCaACG---UCguCCACUG------CU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 56848 0.7 0.907338
Target:  5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3'
miRNA:   3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 169168 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 66358 0.7 0.907338
Target:  5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3'
miRNA:   3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5'
28854 5' -52.5 NC_006146.1 + 52758 0.68 0.953625
Target:  5'- --cGCAGUUGCugacGCAcuGGaugccGGCGAAGCg -3'
miRNA:   3'- ccaCGUCAACGu---CGU--CCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90027 0.67 0.9647
Target:  5'- aGGUGCAGggggaagcggUGgAGCAGGagguggugcugGAgGGAGCc -3'
miRNA:   3'- -CCACGUCa---------ACgUCGUCCa----------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 33998 0.68 0.949464
Target:  5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3'
miRNA:   3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 55289 0.68 0.943694
Target:  5'- --cGCGGUggGCAGCAGccggaaaaagugcagGGCGAAGCc -3'
miRNA:   3'- ccaCGUCAa-CGUCGUCca-------------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 123327 0.69 0.935523
Target:  5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3'
miRNA:   3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5'
28854 5' -52.5 NC_006146.1 + 123212 0.69 0.919357
Target:  5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3'
miRNA:   3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 47245 0.66 0.986659
Target:  5'- uGGcGCGGgucgacGUGGCcccuggcccGGGUGACGAGGUc -3'
miRNA:   3'- -CCaCGUCaa----CGUCG---------UCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 39271 0.67 0.974579
Target:  5'- gGGUGUGGgccccggacucgagaCGGCAGGUGGCagcaGAGGCc -3'
miRNA:   3'- -CCACGUCaac------------GUCGUCCACUG----CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 59045 0.67 0.9647
Target:  5'- cGGUGaGGgcGCAGCGGGccgacacgcagGGCGAcgAGCu -3'
miRNA:   3'- -CCACgUCaaCGUCGUCCa----------CUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 99144 0.67 0.9647
Target:  5'- ---aCAGggGCuccagcgaccGGCAGGUGGCGGAGg -3'
miRNA:   3'- ccacGUCaaCG----------UCGUCCACUGCUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.