miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 169168 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 168236 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 167304 0.67 0.9647
Target:  5'- gGGgccgGCGccUGCAGgGGGggccGGCGggGCg -3'
miRNA:   3'- -CCa---CGUcaACGUCgUCCa---CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 166999 0.68 0.953625
Target:  5'- gGGcGCGGUUgaaGguGCAcguGGUGGCuGggGCa -3'
miRNA:   3'- -CCaCGUCAA---CguCGU---CCACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 166680 0.75 0.648167
Target:  5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3'
miRNA:   3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 158621 0.72 0.833219
Target:  5'- uGGUuCAGcUGcCAGUAGGUGuaGCGggGCu -3'
miRNA:   3'- -CCAcGUCaAC-GUCGUCCAC--UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 153403 0.66 0.983071
Target:  5'- gGGUGCcaagggAGUUcccgGgGGCGGGUGugGcuGGCu -3'
miRNA:   3'- -CCACG------UCAA----CgUCGUCCACugCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 149831 0.79 0.465686
Target:  5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3'
miRNA:   3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 149588 0.66 0.984946
Target:  5'- uGGa--AGggGCGGCGGGaGAgGAGGCu -3'
miRNA:   3'- -CCacgUCaaCGUCGUCCaCUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 142548 0.72 0.815895
Target:  5'- uGGuUGCGG-UGCAGCcuAGGcuaGGCGGAGCc -3'
miRNA:   3'- -CC-ACGUCaACGUCG--UCCa--CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 140115 0.67 0.9647
Target:  5'- aGGUGguGgaagAGgGGGUGGCGGAGg -3'
miRNA:   3'- -CCACguCaacgUCgUCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 132808 0.67 0.976384
Target:  5'- --aGCAGcUGCAgGCGGGgGAUGGguAGCa -3'
miRNA:   3'- ccaCGUCaACGU-CGUCCaCUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 131583 0.66 0.982273
Target:  5'- uGGUGC--UUGUGGCGGGgacuacugugguaGugGggGCu -3'
miRNA:   3'- -CCACGucAACGUCGUCCa------------CugCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 128778 0.66 0.984946
Target:  5'- aGUGUGGc--CAGCAGG-GcCGAAGCg -3'
miRNA:   3'- cCACGUCaacGUCGUCCaCuGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 128086 0.7 0.887484
Target:  5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3'
miRNA:   3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 123327 0.69 0.935523
Target:  5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3'
miRNA:   3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5'
28854 5' -52.5 NC_006146.1 + 123212 0.69 0.919357
Target:  5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3'
miRNA:   3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 116521 0.67 0.96794
Target:  5'- uGGUGCAGgc-CGGUAGGaaGACGuAGUa -3'
miRNA:   3'- -CCACGUCaacGUCGUCCa-CUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 115404 0.7 0.894342
Target:  5'- cGUGCAGgagGCAGCuGGcGGCcGGGCc -3'
miRNA:   3'- cCACGUCaa-CGUCGuCCaCUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 112951 0.67 0.973775
Target:  5'- --cGUAGUgGCAGU-GGUGAUGcAGCa -3'
miRNA:   3'- ccaCGUCAaCGUCGuCCACUGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.