miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 39773 0.66 0.986659
Target:  5'- --cGCAGacGCGGCAGGUG-Cu-GGCu -3'
miRNA:   3'- ccaCGUCaaCGUCGUCCACuGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 59045 0.67 0.9647
Target:  5'- cGGUGaGGgcGCAGCGGGccgacacgcagGGCGAcgAGCu -3'
miRNA:   3'- -CCACgUCaaCGUCGUCCa----------CUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 10986 0.66 0.978798
Target:  5'- --aGCAGgcgGCGcuGCcGGUGACGggGg -3'
miRNA:   3'- ccaCGUCaa-CGU--CGuCCACUGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 68174 0.66 0.978798
Target:  5'- cGG-GCAGgcGCAGCgucAGGacgcgGGCGcAGCg -3'
miRNA:   3'- -CCaCGUCaaCGUCG---UCCa----CUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 166680 0.75 0.648167
Target:  5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3'
miRNA:   3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 149831 0.79 0.465686
Target:  5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3'
miRNA:   3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 33218 0.71 0.857759
Target:  5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3'
miRNA:   3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5'
28854 5' -52.5 NC_006146.1 + 47991 0.67 0.9647
Target:  5'- gGGU-CAGagGUGGCuGGUGGCGGgaGGCu -3'
miRNA:   3'- -CCAcGUCaaCGUCGuCCACUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 149588 0.66 0.984946
Target:  5'- uGGa--AGggGCGGCGGGaGAgGAGGCu -3'
miRNA:   3'- -CCacgUCaaCGUCGUCCaCUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 41484 0.66 0.984946
Target:  5'- cGUGCAGaUGCGGgAGuuuGUGGucUGggGCa -3'
miRNA:   3'- cCACGUCaACGUCgUC---CACU--GCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 131583 0.66 0.982273
Target:  5'- uGGUGC--UUGUGGCGGGgacuacugugguaGugGggGCu -3'
miRNA:   3'- -CCACGucAACGUCGUCCa------------CugCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 153403 0.66 0.983071
Target:  5'- gGGUGCcaagggAGUUcccgGgGGCGGGUGugGcuGGCu -3'
miRNA:   3'- -CCACG------UCAA----CgUCGUCCACugCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 83188 0.68 0.944608
Target:  5'- aGGUGCA---GCAGCugggagaGGGUGGCuauGGAGCc -3'
miRNA:   3'- -CCACGUcaaCGUCG-------UCCACUG---CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 51132 1.15 0.002693
Target:  5'- gGGUGCAGUUGCAGCAGGUGACGAAGCg -3'
miRNA:   3'- -CCACGUCAACGUCGUCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 9902 0.74 0.699962
Target:  5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3'
miRNA:   3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 100285 0.72 0.788629
Target:  5'- uGGgGCGGagGCAGCAGaGgccGugGAGGCa -3'
miRNA:   3'- -CCaCGUCaaCGUCGUC-Ca--CugCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 19136 0.67 0.967939
Target:  5'- uGG-GCAGgcGCA--AGGcUGACGggGCc -3'
miRNA:   3'- -CCaCGUCaaCGUcgUCC-ACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 71643 0.69 0.935523
Target:  5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3'
miRNA:   3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 55864 0.68 0.940415
Target:  5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3'
miRNA:   3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5'
28854 5' -52.5 NC_006146.1 + 77912 0.68 0.940415
Target:  5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3'
miRNA:   3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.