miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 8952 0.66 0.97934
Target:  5'- gCCCgaaagggaaGCCGGGUCuCCCAGGGUgcuauccaCCGUGGa -3'
miRNA:   3'- -GGG---------CGGUCUAG-GGGUUCUA--------GGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 10555 0.7 0.896662
Target:  5'- -aCGCCAGuUCCCCGugacauGGA-CCGUGGCc -3'
miRNA:   3'- ggGCGGUCuAGGGGU------UCUaGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 11626 0.68 0.950688
Target:  5'- aCUGCgAGggCCCCGAGGcCCGcgUGGCg -3'
miRNA:   3'- gGGCGgUCuaGGGGUUCUaGGU--AUUG- -5'
28855 5' -52.6 NC_006146.1 + 12645 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 13086 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 15724 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 16164 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 18802 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 19242 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 20841 0.69 0.915434
Target:  5'- cCCUGCCucuccAUCgCCGAGA-CCGUGACg -3'
miRNA:   3'- -GGGCGGuc---UAGgGGUUCUaGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 21880 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 22320 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 24957 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 25398 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 28035 0.66 0.981302
Target:  5'- aCCCgGCCAGG-CCCCAuaacuaaAGAcCCAgUGGCc -3'
miRNA:   3'- -GGG-CGGUCUaGGGGU-------UCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 28476 0.66 0.985334
Target:  5'- uCCC-CCAGAcagaCCCCAGGGUCgCcaGGCg -3'
miRNA:   3'- -GGGcGGUCUa---GGGGUUCUAG-GuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 32927 0.72 0.836533
Target:  5'- cCCCGCCGGc-CCCCGGGAggcCCGgccGCg -3'
miRNA:   3'- -GGGCGGUCuaGGGGUUCUa--GGUau-UG- -5'
28855 5' -52.6 NC_006146.1 + 33100 0.7 0.889926
Target:  5'- aCCGgCGGAcCCCCGaagcGGAUCCGgcgGACc -3'
miRNA:   3'- gGGCgGUCUaGGGGU----UCUAGGUa--UUG- -5'
28855 5' -52.6 NC_006146.1 + 33309 0.67 0.968744
Target:  5'- gCCGCCgcucgguccuGGggCUCCGGGGUCCGgguGCu -3'
miRNA:   3'- gGGCGG----------UCuaGGGGUUCUAGGUau-UG- -5'
28855 5' -52.6 NC_006146.1 + 33404 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.