miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 216 0.69 0.921205
Target:  5'- cCCCGCgAcGGUCCCCGGGGcgcCCcUGGCc -3'
miRNA:   3'- -GGGCGgU-CUAGGGGUUCUa--GGuAUUG- -5'
28855 5' -52.6 NC_006146.1 + 709 0.66 0.985334
Target:  5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 757 0.7 0.896662
Target:  5'- aUCUGgCAGcugucUCCCCuacucGGAUCCAUGACa -3'
miRNA:   3'- -GGGCgGUCu----AGGGGu----UCUAGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 828 0.69 0.921205
Target:  5'- uCCCGCCGGccAUCCCCAcgcgcggccccGGGcccUCCccGACa -3'
miRNA:   3'- -GGGCGGUC--UAGGGGU-----------UCU---AGGuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 1147 0.69 0.921205
Target:  5'- cCCCGCgaGGGUCCCCGGGccgCCccggGGCu -3'
miRNA:   3'- -GGGCGg-UCUAGGGGUUCua-GGua--UUG- -5'
28855 5' -52.6 NC_006146.1 + 1640 0.66 0.985334
Target:  5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 1760 0.69 0.921205
Target:  5'- uCCCGCCGGccAUCCCCAcgcgcggccccGGGcccUCCccGACa -3'
miRNA:   3'- -GGGCGGUC--UAGGGGU-----------UCU---AGGuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 2079 0.69 0.921205
Target:  5'- cCCCGCgaGGGUCCCCGGGccgCCccggGGCu -3'
miRNA:   3'- -GGGCGg-UCUAGGGGUUCua-GGua--UUG- -5'
28855 5' -52.6 NC_006146.1 + 2572 0.66 0.985334
Target:  5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 2692 0.69 0.921205
Target:  5'- uCCCGCCGGccAUCCCCAcgcgcggccccGGGcccUCCccGACa -3'
miRNA:   3'- -GGGCGGUC--UAGGGGU-----------UCU---AGGuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 3011 0.69 0.921205
Target:  5'- cCCCGCgaGGGUCCCCGGGccgCCccggGGCu -3'
miRNA:   3'- -GGGCGg-UCUAGGGGUUCua-GGua--UUG- -5'
28855 5' -52.6 NC_006146.1 + 3504 0.66 0.985334
Target:  5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 3624 0.69 0.921205
Target:  5'- uCCCGCCGGccAUCCCCAcgcgcggccccGGGcccUCCccGACa -3'
miRNA:   3'- -GGGCGGUC--UAGGGGU-----------UCU---AGGuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 4050 0.7 0.901236
Target:  5'- uCCCGCCGGGcUUCCUAAGAacauccccccaaugUCCccGACa -3'
miRNA:   3'- -GGGCGGUCU-AGGGGUUCU--------------AGGuaUUG- -5'
28855 5' -52.6 NC_006146.1 + 4377 0.74 0.714941
Target:  5'- cCCCGCgGGcUCCCCAGGccgacgCCAUGAa -3'
miRNA:   3'- -GGGCGgUCuAGGGGUUCua----GGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 4736 0.67 0.97444
Target:  5'- uUCCGCCAG-UCCCUGAGucugCUAcugAGCa -3'
miRNA:   3'- -GGGCGGUCuAGGGGUUCua--GGUa--UUG- -5'
28855 5' -52.6 NC_006146.1 + 5759 0.73 0.764302
Target:  5'- aCCCGCUAGGUCCCUAuGuuucCCAaAACg -3'
miRNA:   3'- -GGGCGGUCUAGGGGUuCua--GGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 6427 0.69 0.937045
Target:  5'- gCCCaggGCCAuguGggCCCUggGGUCCAUGGg -3'
miRNA:   3'- -GGG---CGGU---CuaGGGGuuCUAGGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 7162 0.84 0.263766
Target:  5'- aCCCGCCAGGaCCCCAcaAGGUCCAUc-- -3'
miRNA:   3'- -GGGCGGUCUaGGGGU--UCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 8487 0.66 0.985334
Target:  5'- uCCCGCUAccuUCCCCAccAUCC-UGGCc -3'
miRNA:   3'- -GGGCGGUcu-AGGGGUucUAGGuAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.