miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 7162 0.84 0.263766
Target:  5'- aCCCGCCAGGaCCCCAcaAGGUCCAUc-- -3'
miRNA:   3'- -GGGCGGUCUaGGGGU--UCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 153315 0.69 0.92619
Target:  5'- gCCCggGCCAGGUCgCCCAGcAUCCGauugaucUGGCg -3'
miRNA:   3'- -GGG--CGGUCUAG-GGGUUcUAGGU-------AUUG- -5'
28855 5' -52.6 NC_006146.1 + 94322 0.69 0.926731
Target:  5'- uCCUGCUcGGUCCCCAcgGGGaCCAUGu- -3'
miRNA:   3'- -GGGCGGuCUAGGGGU--UCUaGGUAUug -5'
28855 5' -52.6 NC_006146.1 + 170619 0.66 0.987003
Target:  5'- gCCCGCCcccGGGUCuuCCCGGGcUCCcccucacggGUGGCg -3'
miRNA:   3'- -GGGCGG---UCUAG--GGGUUCuAGG---------UAUUG- -5'
28855 5' -52.6 NC_006146.1 + 137795 0.73 0.773851
Target:  5'- gUCCGCCGGAUCCgCUucgGGGGUCCGc--- -3'
miRNA:   3'- -GGGCGGUCUAGG-GG---UUCUAGGUauug -5'
28855 5' -52.6 NC_006146.1 + 47190 0.73 0.783269
Target:  5'- gCCCGCCGccgCCCCGAGcgCCAg--- -3'
miRNA:   3'- -GGGCGGUcuaGGGGUUCuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 52860 0.72 0.836533
Target:  5'- cCCCGCCcgGGggCUCCA-GGUCCGUGGu -3'
miRNA:   3'- -GGGCGG--UCuaGGGGUuCUAGGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 156715 0.71 0.84479
Target:  5'- cCCCGuCCAGGcUCCgGGGGUCCAgccUGGCg -3'
miRNA:   3'- -GGGC-GGUCUaGGGgUUCUAGGU---AUUG- -5'
28855 5' -52.6 NC_006146.1 + 56447 0.7 0.882957
Target:  5'- aCCUgcuggGCCAGAUCUCCAAG-UCCGa--- -3'
miRNA:   3'- -GGG-----CGGUCUAGGGGUUCuAGGUauug -5'
28855 5' -52.6 NC_006146.1 + 164166 0.69 0.921205
Target:  5'- aUCUGCCGGAUCaCCCGGGucaccuUCCGg--- -3'
miRNA:   3'- -GGGCGGUCUAG-GGGUUCu-----AGGUauug -5'
28855 5' -52.6 NC_006146.1 + 106595 0.7 0.909418
Target:  5'- gCCGCCAGuacggCCCCAGGc-CCGUGu- -3'
miRNA:   3'- gGGCGGUCua---GGGGUUCuaGGUAUug -5'
28855 5' -52.6 NC_006146.1 + 66840 0.71 0.878666
Target:  5'- aCCGUCAGGcagaggucauagaucUCCCCAGcGUCCAgGGCg -3'
miRNA:   3'- gGGCGGUCU---------------AGGGGUUcUAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 99662 0.8 0.390228
Target:  5'- cCCCGCCAGG-CCCCAGGAguugaccagCCAgGACu -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUCUa--------GGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 94027 0.7 0.909418
Target:  5'- gCCCGgCAGGggcacggCCCCGAGcgCCGccGCg -3'
miRNA:   3'- -GGGCgGUCUa------GGGGUUCuaGGUauUG- -5'
28855 5' -52.6 NC_006146.1 + 162471 0.75 0.643041
Target:  5'- cCCCGagcucuCCuGGUCCCCAGGGUCCG-GACu -3'
miRNA:   3'- -GGGC------GGuCUAGGGGUUCUAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 78921 0.71 0.853642
Target:  5'- gCCCGCCAGugugauugugaugccUCCCCAGGcUCCuaaaaggGGCa -3'
miRNA:   3'- -GGGCGGUCu--------------AGGGGUUCuAGGua-----UUG- -5'
28855 5' -52.6 NC_006146.1 + 111322 0.69 0.915434
Target:  5'- gCCCuCCAGAUCgCCAccuGcgCCGUGGCc -3'
miRNA:   3'- -GGGcGGUCUAGgGGUu--CuaGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 64855 0.69 0.926731
Target:  5'- uUCUGCCAGG-CUCCAAG-UCCGgaugGGCg -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUCuAGGUa---UUG- -5'
28855 5' -52.6 NC_006146.1 + 4377 0.74 0.714941
Target:  5'- cCCCGCgGGcUCCCCAGGccgacgCCAUGAa -3'
miRNA:   3'- -GGGCGgUCuAGGGGUUCua----GGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 87235 0.73 0.783269
Target:  5'- -aCGCCAucAUCCCCAAGAUCC-UAAa -3'
miRNA:   3'- ggGCGGUc-UAGGGGUUCUAGGuAUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.