miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 48142 1.12 0.004564
Target:  5'- cCCCGCCAGAUCCCCAAGAUCCAUAACu -3'
miRNA:   3'- -GGGCGGUCUAGGGGUUCUAGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 7162 0.84 0.263766
Target:  5'- aCCCGCCAGGaCCCCAcaAGGUCCAUc-- -3'
miRNA:   3'- -GGGCGGUCUaGGGGU--UCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 99662 0.8 0.390228
Target:  5'- cCCCGCCAGG-CCCCAGGAguugaccagCCAgGACu -3'
miRNA:   3'- -GGGCGGUCUaGGGGUUCUa--------GGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 162471 0.75 0.643041
Target:  5'- cCCCGagcucuCCuGGUCCCCAGGGUCCG-GACu -3'
miRNA:   3'- -GGGC------GGuCUAGGGGUUCUAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 4377 0.74 0.714941
Target:  5'- cCCCGCgGGcUCCCCAGGccgacgCCAUGAa -3'
miRNA:   3'- -GGGCGgUCuAGGGGUUCua----GGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 5759 0.73 0.764302
Target:  5'- aCCCGCUAGGUCCCUAuGuuucCCAaAACg -3'
miRNA:   3'- -GGGCGGUCUAGGGGUuCua--GGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 137795 0.73 0.773851
Target:  5'- gUCCGCCGGAUCCgCUucgGGGGUCCGc--- -3'
miRNA:   3'- -GGGCGGUCUAGG-GG---UUCUAGGUauug -5'
28855 5' -52.6 NC_006146.1 + 47190 0.73 0.783269
Target:  5'- gCCCGCCGccgCCCCGAGcgCCAg--- -3'
miRNA:   3'- -GGGCGGUcuaGGGGUUCuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 87235 0.73 0.783269
Target:  5'- -aCGCCAucAUCCCCAAGAUCC-UAAa -3'
miRNA:   3'- ggGCGGUc-UAGGGGUUCUAGGuAUUg -5'
28855 5' -52.6 NC_006146.1 + 107903 0.73 0.783269
Target:  5'- aCCCGCCAGAcUCCCgGAGc-CCAgGGCc -3'
miRNA:   3'- -GGGCGGUCU-AGGGgUUCuaGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 59612 0.72 0.81065
Target:  5'- cCCCGUCAGGUCCUUGAGGaaaaagugcUCCAggcccagGACa -3'
miRNA:   3'- -GGGCGGUCUAGGGGUUCU---------AGGUa------UUG- -5'
28855 5' -52.6 NC_006146.1 + 52860 0.72 0.836533
Target:  5'- cCCCGCCcgGGggCUCCA-GGUCCGUGGu -3'
miRNA:   3'- -GGGCGG--UCuaGGGGUuCUAGGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 32927 0.72 0.836533
Target:  5'- cCCCGCCGGc-CCCCGGGAggcCCGgccGCg -3'
miRNA:   3'- -GGGCGGUCuaGGGGUUCUa--GGUau-UG- -5'
28855 5' -52.6 NC_006146.1 + 114073 0.71 0.84479
Target:  5'- gCCGCCAGAggccgCCUCGGGggCCAg--- -3'
miRNA:   3'- gGGCGGUCUa----GGGGUUCuaGGUauug -5'
28855 5' -52.6 NC_006146.1 + 156715 0.71 0.84479
Target:  5'- cCCCGuCCAGGcUCCgGGGGUCCAgccUGGCg -3'
miRNA:   3'- -GGGC-GGUCUaGGGgUUCUAGGU---AUUG- -5'
28855 5' -52.6 NC_006146.1 + 76251 0.71 0.84479
Target:  5'- aCCGCUucguGGUCCCCAGGGcggCCAUcaugGACc -3'
miRNA:   3'- gGGCGGu---CUAGGGGUUCUa--GGUA----UUG- -5'
28855 5' -52.6 NC_006146.1 + 103654 0.71 0.852847
Target:  5'- gCCCGCCuauccCCCCAGccUCCGUGGCu -3'
miRNA:   3'- -GGGCGGucua-GGGGUUcuAGGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 78921 0.71 0.853642
Target:  5'- gCCCGCCAGugugauugugaugccUCCCCAGGcUCCuaaaaggGGCa -3'
miRNA:   3'- -GGGCGGUCu--------------AGGGGUUCuAGGua-----UUG- -5'
28855 5' -52.6 NC_006146.1 + 71862 0.71 0.87576
Target:  5'- aCCCGCCGGG-CCCUggGGggCCucuACa -3'
miRNA:   3'- -GGGCGGUCUaGGGGuuCUa-GGuauUG- -5'
28855 5' -52.6 NC_006146.1 + 66840 0.71 0.878666
Target:  5'- aCCGUCAGGcagaggucauagaucUCCCCAGcGUCCAgGGCg -3'
miRNA:   3'- gGGCGGUCU---------------AGGGGUUcUAGGUaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.