miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 50608 0.66 0.873071
Target:  5'- -aGGGc-----GGCUGAGCGUGACCGg -3'
miRNA:   3'- ugCCCucgacuCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 50733 0.7 0.685656
Target:  5'- aGCGGGGGCgacGGGGCgucggGAAgGgGGCCGu -3'
miRNA:   3'- -UGCCCUCGa--CUCCGa----CUUgCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51410 0.67 0.84256
Target:  5'- -aGGGGGCUGAGGaguugGAgugcGCGgGACUAg -3'
miRNA:   3'- ugCCCUCGACUCCga---CU----UGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51616 0.71 0.614902
Target:  5'- uCGGGAcagccgGCUGAGGUUGAgggACgGUGACUAc -3'
miRNA:   3'- uGCCCU------CGACUCCGACU---UG-CACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51688 0.66 0.858216
Target:  5'- gACGGG-GCgGGGGCUGAuCGUccuCCGu -3'
miRNA:   3'- -UGCCCuCGaCUCCGACUuGCAcu-GGU- -5'
28857 3' -57.1 NC_006146.1 + 56245 0.66 0.893755
Target:  5'- cGCGGGGGCgGAGGCgg-----GGCCGu -3'
miRNA:   3'- -UGCCCUCGaCUCCGacuugcaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 56275 0.66 0.865747
Target:  5'- -gGGGAGCgagGAGGCcaGGACGU--CCAg -3'
miRNA:   3'- ugCCCUCGa--CUCCGa-CUUGCAcuGGU- -5'
28857 3' -57.1 NC_006146.1 + 57063 0.66 0.880184
Target:  5'- gGCGGGAG--GGGGcCUGAcGCGgaUGGCCAa -3'
miRNA:   3'- -UGCCCUCgaCUCC-GACU-UGC--ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 60283 0.67 0.834448
Target:  5'- aGCGGGAGUuugcgGAGcuGCUGAGCuggGACCc -3'
miRNA:   3'- -UGCCCUCGa----CUC--CGACUUGca-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 61396 0.73 0.486732
Target:  5'- uAUGGGGGUUGucccAGGCUGGcuGCGgUGGCCAa -3'
miRNA:   3'- -UGCCCUCGAC----UCCGACU--UGC-ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 61834 0.66 0.88708
Target:  5'- gUGGGGGCagUGGGGCUGGugcCGgGACUc -3'
miRNA:   3'- uGCCCUCG--ACUCCGACUu--GCaCUGGu -5'
28857 3' -57.1 NC_006146.1 + 65483 0.67 0.834448
Target:  5'- uGCGGGuGCUGA-GCUGGccgGCGUGggGCUg -3'
miRNA:   3'- -UGCCCuCGACUcCGACU---UGCAC--UGGu -5'
28857 3' -57.1 NC_006146.1 + 67035 0.67 0.850485
Target:  5'- cCGGGAGCcGAcagucGGCcgGGACGgaGACCAc -3'
miRNA:   3'- uGCCCUCGaCU-----CCGa-CUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 70710 0.67 0.850485
Target:  5'- aACGGGAGCUcAGGagGAGCGgggGGCUu -3'
miRNA:   3'- -UGCCCUCGAcUCCgaCUUGCa--CUGGu -5'
28857 3' -57.1 NC_006146.1 + 71613 0.66 0.865747
Target:  5'- -gGGGuGaCUGAGGUUGAAU-UGACCc -3'
miRNA:   3'- ugCCCuC-GACUCCGACUUGcACUGGu -5'
28857 3' -57.1 NC_006146.1 + 76404 0.71 0.594686
Target:  5'- cCGGGGGCgccGAcGGCg--GCGUGACCAu -3'
miRNA:   3'- uGCCCUCGa--CU-CCGacuUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 81646 0.67 0.809057
Target:  5'- cCGGGAcGUUGGGGCUcgGAGgGUG-CCGg -3'
miRNA:   3'- uGCCCU-CGACUCCGA--CUUgCACuGGU- -5'
28857 3' -57.1 NC_006146.1 + 88592 0.79 0.247139
Target:  5'- gUGGGGGCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- uGCCCUCGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 88863 0.73 0.52511
Target:  5'- gGCGGGGcCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- -UGCCCUcGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 92473 0.66 0.865747
Target:  5'- gGCGGGuauauguGCccggGGGGUUGAAgGUGGCuCAg -3'
miRNA:   3'- -UGCCCu------CGa---CUCCGACUUgCACUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.