miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 348 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 1279 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 2211 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 3143 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 13882 0.67 0.850485
Target:  5'- aGCGGGAuagaguggacgGCcGAGGCcGcGCGUGACUu -3'
miRNA:   3'- -UGCCCU-----------CGaCUCCGaCuUGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 14109 0.66 0.873071
Target:  5'- gGCGGGAuGUcGGGGCUGcuGGCGgcGGCCu -3'
miRNA:   3'- -UGCCCU-CGaCUCCGAC--UUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 20198 0.71 0.584615
Target:  5'- cCGGGGGCgcagGAGGCUGGGCaUGuACUg -3'
miRNA:   3'- uGCCCUCGa---CUCCGACUUGcAC-UGGu -5'
28857 3' -57.1 NC_006146.1 + 29598 0.67 0.809057
Target:  5'- cCGGGGGCUcagccAGGCUGAACcc-GCCAa -3'
miRNA:   3'- uGCCCUCGAc----UCCGACUUGcacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 36658 0.67 0.834448
Target:  5'- cGCGGGGGUucucUGAGGCUacAUG-GGCCu -3'
miRNA:   3'- -UGCCCUCG----ACUCCGAcuUGCaCUGGu -5'
28857 3' -57.1 NC_006146.1 + 39874 0.74 0.431823
Target:  5'- cCGGGggaggaGGCUGAGGCUGAGCG--GCCu -3'
miRNA:   3'- uGCCC------UCGACUCCGACUUGCacUGGu -5'
28857 3' -57.1 NC_006146.1 + 39972 0.67 0.841757
Target:  5'- -gGGGAaggagagGCUGAGGCUGcuGCGgcccguagUGGCCGg -3'
miRNA:   3'- ugCCCU-------CGACUCCGACu-UGC--------ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 40739 0.68 0.79133
Target:  5'- gGCGGGcccguGCuUGGGGCUGGccacggACGUGgACCu -3'
miRNA:   3'- -UGCCCu----CG-ACUCCGACU------UGCAC-UGGu -5'
28857 3' -57.1 NC_006146.1 + 41219 0.66 0.880184
Target:  5'- cGCGGGcaCUG-GGCgc-GCGUGGCCAg -3'
miRNA:   3'- -UGCCCucGACuCCGacuUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 42260 0.67 0.817688
Target:  5'- cGCGaGGAGCUGGcucaGCUGGGCGacACCGg -3'
miRNA:   3'- -UGC-CCUCGACUc---CGACUUGCacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 43628 0.72 0.554628
Target:  5'- -aGGGAGUgGGcGGCgGGGCGUGGCCGc -3'
miRNA:   3'- ugCCCUCGaCU-CCGaCUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 43985 0.7 0.665533
Target:  5'- aGCGGGAGagGAGGCUGAGua-GGCCGg -3'
miRNA:   3'- -UGCCCUCgaCUCCGACUUgcaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 44314 0.68 0.782251
Target:  5'- gUGGGGGCUGGGGC----CGUGGCa- -3'
miRNA:   3'- uGCCCUCGACUCCGacuuGCACUGgu -5'
28857 3' -57.1 NC_006146.1 + 44336 0.66 0.893755
Target:  5'- cCGGGGGCUucugcacagGuGGCUGAugGgGACgAg -3'
miRNA:   3'- uGCCCUCGA---------CuCCGACUugCaCUGgU- -5'
28857 3' -57.1 NC_006146.1 + 47643 1.07 0.00309
Target:  5'- uACGGGAGCUGAGGCUGAACGUGACCAc -3'
miRNA:   3'- -UGCCCUCGACUCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 49078 0.67 0.850485
Target:  5'- -aGGaGGGCUGAGGCUccGGcUGUGGCuCAg -3'
miRNA:   3'- ugCC-CUCGACUCCGA--CUuGCACUG-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.