miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 47643 1.07 0.00309
Target:  5'- uACGGGAGCUGAGGCUGAACGUGACCAc -3'
miRNA:   3'- -UGCCCUCGACUCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 88592 0.79 0.247139
Target:  5'- gUGGGGGCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- uGCCCUCGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 123491 0.75 0.380707
Target:  5'- -gGaGGAGCUGAGGCUGGcCcUGGCCAc -3'
miRNA:   3'- ugC-CCUCGACUCCGACUuGcACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 157492 0.74 0.423026
Target:  5'- gGCGGGccuugcagaccuGGCUGAGGCaGucCGUGGCCGc -3'
miRNA:   3'- -UGCCC------------UCGACUCCGaCuuGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 39874 0.74 0.431823
Target:  5'- cCGGGggaggaGGCUGAGGCUGAGCG--GCCu -3'
miRNA:   3'- uGCCC------UCGACUCCGACUUGCacUGGu -5'
28857 3' -57.1 NC_006146.1 + 61396 0.73 0.486732
Target:  5'- uAUGGGGGUUGucccAGGCUGGcuGCGgUGGCCAa -3'
miRNA:   3'- -UGCCCUCGAC----UCCGACU--UGC-ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 88863 0.73 0.52511
Target:  5'- gGCGGGGcCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- -UGCCCUcGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 43628 0.72 0.554628
Target:  5'- -aGGGAGUgGGcGGCgGGGCGUGGCCGc -3'
miRNA:   3'- ugCCCUCGaCU-CCGaCUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 169241 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 170172 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 168309 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 167377 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 20198 0.71 0.584615
Target:  5'- cCGGGGGCgcagGAGGCUGGGCaUGuACUg -3'
miRNA:   3'- uGCCCUCGa---CUCCGACUUGcAC-UGGu -5'
28857 3' -57.1 NC_006146.1 + 118245 0.71 0.594686
Target:  5'- -aGGGGGC-GAGGCUGGACGcccucaUGcGCCAg -3'
miRNA:   3'- ugCCCUCGaCUCCGACUUGC------AC-UGGU- -5'
28857 3' -57.1 NC_006146.1 + 1279 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 2211 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 348 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 3143 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 76404 0.71 0.594686
Target:  5'- cCGGGGGCgccGAcGGCg--GCGUGACCAu -3'
miRNA:   3'- uGCCCUCGa--CU-CCGacuUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 112110 0.71 0.604784
Target:  5'- uCGGGGGUgGAGGUggugcUGGugGUGGCCu -3'
miRNA:   3'- uGCCCUCGaCUCCG-----ACUugCACUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.