miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 157492 0.74 0.423026
Target:  5'- gGCGGGccuugcagaccuGGCUGAGGCaGucCGUGGCCGc -3'
miRNA:   3'- -UGCCC------------UCGACUCCGaCuuGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 127146 0.67 0.817688
Target:  5'- cGCGuGGAGCUGGacGGCgucauGCGcGACCAc -3'
miRNA:   3'- -UGC-CCUCGACU--CCGacu--UGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51410 0.67 0.84256
Target:  5'- -aGGGGGCUGAGGaguugGAgugcGCGgGACUAg -3'
miRNA:   3'- ugCCCUCGACUCCga---CU----UGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 56245 0.66 0.893755
Target:  5'- cGCGGGGGCgGAGGCgg-----GGCCGu -3'
miRNA:   3'- -UGCCCUCGaCUCCGacuugcaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 169241 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 170172 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51616 0.71 0.614902
Target:  5'- uCGGGAcagccgGCUGAGGUUGAgggACgGUGACUAc -3'
miRNA:   3'- uGCCCU------CGACUCCGACU---UG-CACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 147105 0.7 0.655428
Target:  5'- -gGGcGAGCUGGGGCUcAGCG-GGCCc -3'
miRNA:   3'- ugCC-CUCGACUCCGAcUUGCaCUGGu -5'
28857 3' -57.1 NC_006146.1 + 97914 0.69 0.712534
Target:  5'- --aGGAGCUGAGGC-GAGCccccucggaggcccGUGACCu -3'
miRNA:   3'- ugcCCUCGACUCCGaCUUG--------------CACUGGu -5'
28857 3' -57.1 NC_006146.1 + 98296 0.67 0.817688
Target:  5'- gGCGguGGGGCUGAgGGCgUGcucCGUGGCCGu -3'
miRNA:   3'- -UGC--CCUCGACU-CCG-ACuu-GCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 44314 0.68 0.782251
Target:  5'- gUGGGGGCUGGGGC----CGUGGCa- -3'
miRNA:   3'- uGCCCUCGACUCCGacuuGCACUGgu -5'
28857 3' -57.1 NC_006146.1 + 95519 0.7 0.695657
Target:  5'- cCGGGAGCUGucGGGUgcGGCGccUGGCCAg -3'
miRNA:   3'- uGCCCUCGAC--UCCGacUUGC--ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 61396 0.73 0.486732
Target:  5'- uAUGGGGGUUGucccAGGCUGGcuGCGgUGGCCAa -3'
miRNA:   3'- -UGCCCUCGAC----UCCGACU--UGC-ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 40739 0.68 0.79133
Target:  5'- gGCGGGcccguGCuUGGGGCUGGccacggACGUGgACCu -3'
miRNA:   3'- -UGCCCu----CG-ACUCCGACU------UGCAC-UGGu -5'
28857 3' -57.1 NC_006146.1 + 167377 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 139129 0.7 0.685656
Target:  5'- uUGGGGGCUGuGGGCcGAACGggGGCUc -3'
miRNA:   3'- uGCCCUCGAC-UCCGaCUUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 150445 0.67 0.815116
Target:  5'- -gGGGAGUUGuagaagccggacagGGGCUGGAUgacaGUGGCCc -3'
miRNA:   3'- ugCCCUCGAC--------------UCCGACUUG----CACUGGu -5'
28857 3' -57.1 NC_006146.1 + 65483 0.67 0.834448
Target:  5'- uGCGGGuGCUGA-GCUGGccgGCGUGggGCUg -3'
miRNA:   3'- -UGCCCuCGACUcCGACU---UGCAC--UGGu -5'
28857 3' -57.1 NC_006146.1 + 168309 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 112110 0.71 0.604784
Target:  5'- uCGGGGGUgGAGGUggugcUGGugGUGGCCu -3'
miRNA:   3'- uGCCCUCGaCUCCG-----ACUugCACUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.