miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 157581 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 146241 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 143163 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 14109 0.66 0.873071
Target:  5'- gGCGGGAuGUcGGGGCUGcuGGCGgcGGCCu -3'
miRNA:   3'- -UGCCCU-CGaCUCCGAC--UUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 139535 0.66 0.873071
Target:  5'- uAUGGGGGCcaagGGGGCU--GCGUGugUu -3'
miRNA:   3'- -UGCCCUCGa---CUCCGAcuUGCACugGu -5'
28857 3' -57.1 NC_006146.1 + 118017 0.66 0.873071
Target:  5'- uGCGGG-GCUcGGGGCgc-GCGagGACCAc -3'
miRNA:   3'- -UGCCCuCGA-CUCCGacuUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 92473 0.66 0.865747
Target:  5'- gGCGGGuauauguGCccggGGGGUUGAAgGUGGCuCAg -3'
miRNA:   3'- -UGCCCu------CGa---CUCCGACUUgCACUG-GU- -5'
28857 3' -57.1 NC_006146.1 + 120539 0.66 0.858216
Target:  5'- gGCGGGAcuGCUGgccaagauccccAGGCUGGcCGaGGCCGc -3'
miRNA:   3'- -UGCCCU--CGAC------------UCCGACUuGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51688 0.66 0.858216
Target:  5'- gACGGG-GCgGGGGCUGAuCGUccuCCGu -3'
miRNA:   3'- -UGCCCuCGaCUCCGACUuGCAcu-GGU- -5'
28857 3' -57.1 NC_006146.1 + 149319 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 152397 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 155475 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 154503 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 151425 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 148347 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 145269 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 142191 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 138893 0.66 0.88708
Target:  5'- cUGGGAGU--AGGCUGAG-GUGACg- -3'
miRNA:   3'- uGCCCUCGacUCCGACUUgCACUGgu -5'
28857 3' -57.1 NC_006146.1 + 61834 0.66 0.88708
Target:  5'- gUGGGGGCagUGGGGCUGGugcCGgGACUc -3'
miRNA:   3'- uGCCCUCG--ACUCCGACUu--GCaCUGGu -5'
28857 3' -57.1 NC_006146.1 + 158554 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.