miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 95519 0.7 0.695657
Target:  5'- cCGGGAGCUGucGGGUgcGGCGccUGGCCAg -3'
miRNA:   3'- uGCCCUCGAC--UCCGacUUGC--ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 168309 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 169649 0.66 0.893098
Target:  5'- gGCGGGgagaauacAGCUG-GGCgUGGcgggcgcGCGUGGCCc -3'
miRNA:   3'- -UGCCC--------UCGACuCCG-ACU-------UGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 127722 0.66 0.865747
Target:  5'- cGCGaGGAGCUGAuggGGCUGGGcCGgagaGCCu -3'
miRNA:   3'- -UGC-CCUCGACU---CCGACUU-GCac--UGGu -5'
28857 3' -57.1 NC_006146.1 + 127146 0.67 0.817688
Target:  5'- cGCGuGGAGCUGGacGGCgucauGCGcGACCAc -3'
miRNA:   3'- -UGC-CCUCGACU--CCGacu--UGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 167377 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 166879 0.66 0.865747
Target:  5'- -gGGGAGCgGAgGGCgaggagGAGCGUGAgUg -3'
miRNA:   3'- ugCCCUCGaCU-CCGa-----CUUGCACUgGu -5'
28857 3' -57.1 NC_006146.1 + 61396 0.73 0.486732
Target:  5'- uAUGGGGGUUGucccAGGCUGGcuGCGgUGGCCAa -3'
miRNA:   3'- -UGCCCUCGAC----UCCGACU--UGC-ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 157492 0.74 0.423026
Target:  5'- gGCGGGccuugcagaccuGGCUGAGGCaGucCGUGGCCGc -3'
miRNA:   3'- -UGCCC------------UCGACUCCGaCuuGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 65483 0.67 0.834448
Target:  5'- uGCGGGuGCUGA-GCUGGccgGCGUGggGCUg -3'
miRNA:   3'- -UGCCCuCGACUcCGACU---UGCAC--UGGu -5'
28857 3' -57.1 NC_006146.1 + 44336 0.66 0.893755
Target:  5'- cCGGGGGCUucugcacagGuGGCUGAugGgGACgAg -3'
miRNA:   3'- uGCCCUCGA---------CuCCGACUugCaCUGgU- -5'
28857 3' -57.1 NC_006146.1 + 97914 0.69 0.712534
Target:  5'- --aGGAGCUGAGGC-GAGCccccucggaggcccGUGACCu -3'
miRNA:   3'- ugcCCUCGACUCCGaCUUG--------------CACUGGu -5'
28857 3' -57.1 NC_006146.1 + 51688 0.66 0.858216
Target:  5'- gACGGG-GCgGGGGCUGAuCGUccuCCGu -3'
miRNA:   3'- -UGCCCuCGaCUCCGACUuGCAcu-GGU- -5'
28857 3' -57.1 NC_006146.1 + 50608 0.66 0.873071
Target:  5'- -aGGGc-----GGCUGAGCGUGACCGg -3'
miRNA:   3'- ugCCCucgacuCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 41219 0.66 0.880184
Target:  5'- cGCGGGcaCUG-GGCgc-GCGUGGCCAg -3'
miRNA:   3'- -UGCCCucGACuCCGacuUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51616 0.71 0.614902
Target:  5'- uCGGGAcagccgGCUGAGGUUGAgggACgGUGACUAc -3'
miRNA:   3'- uGCCCU------CGACUCCGACU---UG-CACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 169241 0.71 0.584615
Target:  5'- cCGGGGGCUGAgggGGCUcccgaGGGCGgGGCCGg -3'
miRNA:   3'- uGCCCUCGACU---CCGA-----CUUGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 14109 0.66 0.873071
Target:  5'- gGCGGGAuGUcGGGGCUGcuGGCGgcGGCCu -3'
miRNA:   3'- -UGCCCU-CGaCUCCGAC--UUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 138740 0.69 0.744701
Target:  5'- uCGGGuGGCUGA-GCUGAGCGgccuGCCAc -3'
miRNA:   3'- uGCCC-UCGACUcCGACUUGCac--UGGU- -5'
28857 3' -57.1 NC_006146.1 + 108857 0.68 0.773039
Target:  5'- gAUGGGAacGCUGAcGGCUGGaauGCGgcagaGGCCGa -3'
miRNA:   3'- -UGCCCU--CGACU-CCGACU---UGCa----CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.