miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 39829 0.66 0.852117
Target:  5'- gCCCGgcgGCCUCGgCCgcacaGUggGCCGGCggggGCUg -3'
miRNA:   3'- -GGGU---UGGAGCgGGa----CA--UGGUCGa---CGA- -5'
28857 5' -57.6 NC_006146.1 + 41984 0.76 0.344964
Target:  5'- uCCCGGCCUCGaCCCgca--CAGCUGCg -3'
miRNA:   3'- -GGGUUGGAGC-GGGacaugGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 42900 0.66 0.867222
Target:  5'- gCCGACgCUaggGCCuCUGUcCCGGCUGUc -3'
miRNA:   3'- gGGUUG-GAg--CGG-GACAuGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 43318 0.67 0.823014
Target:  5'- aCCCGGCCggcgcggccucggcCGCCCaGgGCCAGCagGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaCaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 46789 0.7 0.658587
Target:  5'- -aCAGCCaCGUCUUcUACCAGCUGCg -3'
miRNA:   3'- ggGUUGGaGCGGGAcAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 46976 0.67 0.79708
Target:  5'- gCCCGGCCgccgccaggaauugCGCCCgucggACCGGCaGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaca--UGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 47677 1.1 0.002013
Target:  5'- gCCCAACCUCGCCCUGUACCAGCUGCUg -3'
miRNA:   3'- -GGGUUGGAGCGGGACAUGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 52666 0.67 0.808491
Target:  5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 62501 0.67 0.836239
Target:  5'- gCCAgcagcACCUgGCCCUGggg-GGCUGCg -3'
miRNA:   3'- gGGU-----UGGAgCGGGACauggUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 64564 0.68 0.756753
Target:  5'- aCCCAAUgCUCGCCCgcagGUAUgGGCaGUg -3'
miRNA:   3'- -GGGUUG-GAGCGGGa---CAUGgUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 68035 0.66 0.874469
Target:  5'- gCCCGGCCaCGaCCagGUGgCGGCUGCc -3'
miRNA:   3'- -GGGUUGGaGCgGGa-CAUgGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 68325 0.7 0.62835
Target:  5'- cCCCGACCUgcaCGCUCggcucggACCuGCUGCUg -3'
miRNA:   3'- -GGGUUGGA---GCGGGaca----UGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 74075 0.67 0.836239
Target:  5'- gCCCAACCUgccCGCCC-GUccccACCAGggaagcCUGCa -3'
miRNA:   3'- -GGGUUGGA---GCGGGaCA----UGGUC------GACGa -5'
28857 5' -57.6 NC_006146.1 + 84405 0.66 0.867222
Target:  5'- gCCCAGCU--GCCCcucaaGgcCCAGCUGCc -3'
miRNA:   3'- -GGGUUGGagCGGGa----CauGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 85277 0.67 0.818791
Target:  5'- cCCCugucuGCCUCucuggcccuuuGCCCcgGUGCCAGCUuccgaggcgggcgGCUg -3'
miRNA:   3'- -GGGu----UGGAG-----------CGGGa-CAUGGUCGA-------------CGA- -5'
28857 5' -57.6 NC_006146.1 + 86365 0.66 0.852117
Target:  5'- gCCCAACCaccugccacgGCgCCUGUACCGGCa--- -3'
miRNA:   3'- -GGGUUGGag--------CG-GGACAUGGUCGacga -5'
28857 5' -57.6 NC_006146.1 + 92239 0.66 0.867222
Target:  5'- gCgGGCC-CGgCCUGUGgCuGCUGCUg -3'
miRNA:   3'- gGgUUGGaGCgGGACAUgGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 93566 0.67 0.828025
Target:  5'- gCCGGCCUCGUCCUucACCAucagccuggGCaUGCg -3'
miRNA:   3'- gGGUUGGAGCGGGAcaUGGU---------CG-ACGa -5'
28857 5' -57.6 NC_006146.1 + 95036 0.7 0.665624
Target:  5'- uCCCGGCCUCGUCCaccacgaucacguuUGUGguCCagAGCUGCc -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------ACAU--GG--UCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.