miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 3155 0.68 0.775385
Target:  5'- aCCCGGCCccugCGCCCUG-AUCgAGCaccUGCg -3'
miRNA:   3'- -GGGUUGGa---GCGGGACaUGG-UCG---ACGa -5'
28857 5' -57.6 NC_006146.1 + 10487 0.69 0.718278
Target:  5'- gCCCAcuACCUCGCCCUcUAUC-GCagGCUc -3'
miRNA:   3'- -GGGU--UGGAGCGGGAcAUGGuCGa-CGA- -5'
28857 5' -57.6 NC_006146.1 + 13191 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 14936 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 15745 0.72 0.538538
Target:  5'- gCCCAGCaacgUgGCCCUG-GCCcGCUGCUg -3'
miRNA:   3'- -GGGUUGg---AgCGGGACaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 16269 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 17597 0.66 0.874469
Target:  5'- -gCGACCUgGCCCgggccugGUGCCuGgaGCa -3'
miRNA:   3'- ggGUUGGAgCGGGa------CAUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 18013 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 19347 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 21091 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 22425 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 24169 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 24273 0.7 0.668636
Target:  5'- aCCCAgGCCUCGugaCCCUG-GCCGGggGCUg -3'
miRNA:   3'- -GGGU-UGGAGC---GGGACaUGGUCgaCGA- -5'
28857 5' -57.6 NC_006146.1 + 25503 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 27075 0.67 0.828025
Target:  5'- gCCAAUaaUCGUCC-GUACUAGCUGUg -3'
miRNA:   3'- gGGUUGg-AGCGGGaCAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 27247 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 28581 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 32760 0.66 0.867222
Target:  5'- aCCCAaaGCCcacaUUGCCCccauccaGCCGGCUGCc -3'
miRNA:   3'- -GGGU--UGG----AGCGGGaca----UGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 33520 0.66 0.867222
Target:  5'- uCCCGGCCUCccuCCCuagguUGUGCCcGGCUuGCc -3'
miRNA:   3'- -GGGUUGGAGc--GGG-----ACAUGG-UCGA-CGa -5'
28857 5' -57.6 NC_006146.1 + 38051 0.67 0.818791
Target:  5'- cCCCcACCUCuccugugaugagaGgCCUGUACUAagauGCUGCUa -3'
miRNA:   3'- -GGGuUGGAG-------------CgGGACAUGGU----CGACGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.