miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 119695 0.76 0.330008
Target:  5'- cCCCGGCCUCguggauGCCCUGUaccacGCCAGCccGCa -3'
miRNA:   3'- -GGGUUGGAG------CGGGACA-----UGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 113692 0.67 0.819639
Target:  5'- gCCCGGCCUCcgGCCCgGggaCGGCgGCg -3'
miRNA:   3'- -GGGUUGGAG--CGGGaCaugGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 93566 0.67 0.828025
Target:  5'- gCCGGCCUCGUCCUucACCAucagccuggGCaUGCg -3'
miRNA:   3'- gGGUUGGAGCGGGAcaUGGU---------CG-ACGa -5'
28857 5' -57.6 NC_006146.1 + 129896 0.66 0.871595
Target:  5'- uUCGACCacgugucucucugCGCCCUGgggcGCCGGCgcgGCa -3'
miRNA:   3'- gGGUUGGa------------GCGGGACa---UGGUCGa--CGa -5'
28857 5' -57.6 NC_006146.1 + 95036 0.7 0.665624
Target:  5'- uCCCGGCCUCGUCCaccacgaucacguuUGUGguCCagAGCUGCc -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------ACAU--GG--UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 14936 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 21091 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 24169 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 3155 0.68 0.775385
Target:  5'- aCCCGGCCccugCGCCCUG-AUCgAGCaccUGCg -3'
miRNA:   3'- -GGGUUGGa---GCGGGACaUGG-UCG---ACGa -5'
28857 5' -57.6 NC_006146.1 + 52666 0.67 0.808491
Target:  5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 143556 0.69 0.728026
Target:  5'- cCCCGGCCUUGCCgCgccACCcGCUGUUu -3'
miRNA:   3'- -GGGUUGGAGCGG-GacaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 41984 0.76 0.344964
Target:  5'- uCCCGGCCUCGaCCCgca--CAGCUGCg -3'
miRNA:   3'- -GGGUUGGAGC-GGGacaugGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 128634 0.67 0.793519
Target:  5'- cCCCggUgUCGCCCagcUGaGCCAGCUccucGCg -3'
miRNA:   3'- -GGGuuGgAGCGGG---ACaUGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 122879 0.71 0.578105
Target:  5'- gCCgAGCCUCGCaCCUc--CCGGUUGCUg -3'
miRNA:   3'- -GGgUUGGAGCG-GGAcauGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 27247 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 46976 0.67 0.79708
Target:  5'- gCCCGGCCgccgccaggaauugCGCCCgucggACCGGCaGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaca--UGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 43318 0.67 0.823014
Target:  5'- aCCCGGCCggcgcggccucggcCGCCCaGgGCCAGCagGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaCaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 127631 0.7 0.648518
Target:  5'- gCCgGACCUccaggcCGCCCUGUGCCucucGGUggGCUa -3'
miRNA:   3'- -GGgUUGGA------GCGGGACAUGG----UCGa-CGA- -5'
28857 5' -57.6 NC_006146.1 + 18013 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.