miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 47677 1.1 0.002013
Target:  5'- gCCCAACCUCGCCCUGUACCAGCUGCUg -3'
miRNA:   3'- -GGGUUGGAGCGGGACAUGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 129900 0.84 0.115899
Target:  5'- gCCCGGCUcuUCGCCCUGaccagacaggGCCAGCUGCUg -3'
miRNA:   3'- -GGGUUGG--AGCGGGACa---------UGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 119695 0.76 0.330008
Target:  5'- cCCCGGCCUCguggauGCCCUGUaccacGCCAGCccGCa -3'
miRNA:   3'- -GGGUUGGAG------CGGGACA-----UGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 41984 0.76 0.344964
Target:  5'- uCCCGGCCUCGaCCCgca--CAGCUGCg -3'
miRNA:   3'- -GGGUUGGAGC-GGGacaugGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 115592 0.75 0.3604
Target:  5'- gCCUgucaGGCUUCGCCCUGcacuuuuuCCGGCUGCUg -3'
miRNA:   3'- -GGG----UUGGAGCGGGACau------GGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 142661 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 145738 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 148816 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 154972 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 151894 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 158050 0.74 0.445401
Target:  5'- aCCCAGCCUCGCCCcaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa--------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 15745 0.72 0.538538
Target:  5'- gCCCAGCaacgUgGCCCUG-GCCcGCUGCUg -3'
miRNA:   3'- -GGGUUGg---AgCGGGACaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 122879 0.71 0.578105
Target:  5'- gCCgAGCCUCGCaCCUc--CCGGUUGCUg -3'
miRNA:   3'- -GGgUUGGAGCG-GGAcauGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 111832 0.71 0.608193
Target:  5'- gCCCAGCaagagcucgUCGCCCUGcgugucgGCCcGCUGCg -3'
miRNA:   3'- -GGGUUGg--------AGCGGGACa------UGGuCGACGa -5'
28857 5' -57.6 NC_006146.1 + 68325 0.7 0.62835
Target:  5'- cCCCGACCUgcaCGCUCggcucggACCuGCUGCUg -3'
miRNA:   3'- -GGGUUGGA---GCGGGaca----UGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 127631 0.7 0.648518
Target:  5'- gCCgGACCUccaggcCGCCCUGUGCCucucGGUggGCUa -3'
miRNA:   3'- -GGgUUGGA------GCGGGACAUGG----UCGa-CGA- -5'
28857 5' -57.6 NC_006146.1 + 115230 0.7 0.648518
Target:  5'- gCCCGugCUgGCcuucaacgccgCCUGgcuCCGGCUGCUg -3'
miRNA:   3'- -GGGUugGAgCG-----------GGACau-GGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 46789 0.7 0.658587
Target:  5'- -aCAGCCaCGUCUUcUACCAGCUGCg -3'
miRNA:   3'- ggGUUGGaGCGGGAcAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 95036 0.7 0.665624
Target:  5'- uCCCGGCCUCGUCCaccacgaucacguuUGUGguCCagAGCUGCc -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------ACAU--GG--UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 24273 0.7 0.668636
Target:  5'- aCCCAgGCCUCGugaCCCUG-GCCGGggGCUg -3'
miRNA:   3'- -GGGU-UGGAGC---GGGACaUGGUCgaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.