miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 52666 0.67 0.808491
Target:  5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 27247 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 42900 0.66 0.867222
Target:  5'- gCCGACgCUaggGCCuCUGUcCCGGCUGUc -3'
miRNA:   3'- gGGUUG-GAg--CGG-GACAuGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 139697 0.66 0.844271
Target:  5'- gCCAGgCUUGUgguuaaggucccUCUGUGCCAGCUGa- -3'
miRNA:   3'- gGGUUgGAGCG------------GGACAUGGUCGACga -5'
28857 5' -57.6 NC_006146.1 + 93566 0.67 0.828025
Target:  5'- gCCGGCCUCGUCCUucACCAucagccuggGCaUGCg -3'
miRNA:   3'- gGGUUGGAGCGGGAcaUGGU---------CG-ACGa -5'
28857 5' -57.6 NC_006146.1 + 24169 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 28581 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 21091 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 18013 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 62501 0.67 0.836239
Target:  5'- gCCAgcagcACCUgGCCCUGggg-GGCUGCg -3'
miRNA:   3'- gGGU-----UGGAgCGGGACauggUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 33520 0.66 0.867222
Target:  5'- uCCCGGCCUCccuCCCuagguUGUGCCcGGCUuGCc -3'
miRNA:   3'- -GGGUUGGAGc--GGG-----ACAUGG-UCGA-CGa -5'
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 143556 0.69 0.728026
Target:  5'- cCCCGGCCUUGCCgCgccACCcGCUGUUu -3'
miRNA:   3'- -GGGUUGGAGCGG-GacaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 19347 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 146716 0.66 0.844271
Target:  5'- gCCCAGCCcuccUCuGCCCUGU-CCAcgUGCa -3'
miRNA:   3'- -GGGUUGG----AG-CGGGACAuGGUcgACGa -5'
28857 5' -57.6 NC_006146.1 + 129896 0.66 0.871595
Target:  5'- uUCGACCacgugucucucugCGCCCUGgggcGCCGGCgcgGCa -3'
miRNA:   3'- gGGUUGGa------------GCGGGACa---UGGUCGa--CGa -5'
28857 5' -57.6 NC_006146.1 + 100733 0.68 0.756753
Target:  5'- aCCGGCCUCGCCggccACCAGC-GCc -3'
miRNA:   3'- gGGUUGGAGCGGgacaUGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 148816 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 154972 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 151894 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.