miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 106705 0.67 0.614602
Target:  5'- -cGGGGGgGACCCgGGCGuauuuccCACCc- -3'
miRNA:   3'- guCUCCCgCUGGGgCCGCuu-----GUGGuc -5'
2886 3' -60.6 NC_001493.1 + 100307 0.67 0.604638
Target:  5'- uGGAgcacGGGCGGCCCCGGgGuugucGCgguucuucaaACCAGa -3'
miRNA:   3'- gUCU----CCCGCUGGGGCCgCu----UG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 70675 0.67 0.594694
Target:  5'- -cGGGcGGgGAUCCCGGCGGaucACACUg- -3'
miRNA:   3'- guCUC-CCgCUGGGGCCGCU---UGUGGuc -5'
2886 3' -60.6 NC_001493.1 + 30946 0.68 0.584776
Target:  5'- uCGGGGuGGCGcUCCCGGC-AACGCCc- -3'
miRNA:   3'- -GUCUC-CCGCuGGGGCCGcUUGUGGuc -5'
2886 3' -60.6 NC_001493.1 + 114227 0.68 0.57489
Target:  5'- aCAGAGgaGGCacauguccauCCCCGGaaaGAGCACCGGu -3'
miRNA:   3'- -GUCUC--CCGcu--------GGGGCCg--CUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 118741 0.68 0.559156
Target:  5'- cCGGAGGGUGuacaucgucgauaccACCCCGGCGcuCugguCCAu -3'
miRNA:   3'- -GUCUCCCGC---------------UGGGGCCGCuuGu---GGUc -5'
2886 3' -60.6 NC_001493.1 + 9741 0.68 0.535793
Target:  5'- uCGGAGGauccCGuCCCguCGGCGAGCACCGc -3'
miRNA:   3'- -GUCUCCc---GCuGGG--GCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 125295 0.68 0.535793
Target:  5'- uCGGAGGauccCGuCCCguCGGCGAGCACCGc -3'
miRNA:   3'- -GUCUCCc---GCuGGG--GCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 109137 0.69 0.516589
Target:  5'- gAGAGauGGCGA-CCCGGUGAAU-CCAGa -3'
miRNA:   3'- gUCUC--CCGCUgGGGCCGCUUGuGGUC- -5'
2886 3' -60.6 NC_001493.1 + 111646 0.69 0.507091
Target:  5'- uCGGAGGGgucCGACucuucgggcguaCCC-GCGAGCACCAGc -3'
miRNA:   3'- -GUCUCCC---GCUG------------GGGcCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 8781 0.69 0.507091
Target:  5'- gAGGGGGCGuuuauuauUCCCGaGgGGACACCGc -3'
miRNA:   3'- gUCUCCCGCu-------GGGGC-CgCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 124335 0.69 0.507091
Target:  5'- gAGGGGGCGuuuauuauUCCCGaGgGGACACCGc -3'
miRNA:   3'- gUCUCCCGCu-------GGGGC-CgCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 13117 0.69 0.497667
Target:  5'- -cGAuGGCGAUCUCGGCGGcgGCCAGc -3'
miRNA:   3'- guCUcCCGCUGGGGCCGCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 128671 0.69 0.497667
Target:  5'- -cGAuGGCGAUCUCGGCGGcgGCCAGc -3'
miRNA:   3'- guCUcCCGCUGGGGCCGCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 48354 0.69 0.497667
Target:  5'- aCGGuGGacGCGACgCCGGCGGACagaaaccucuACCGGg -3'
miRNA:   3'- -GUCuCC--CGCUGgGGCCGCUUG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 5525 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 42440 0.69 0.479062
Target:  5'- -cGAGaGGC--CUCCGGUGAAUACCAGa -3'
miRNA:   3'- guCUC-CCGcuGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 121080 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 91769 0.71 0.416851
Target:  5'- aCGGAGGGUGcGCCcgcgaCCGGCGGAgGaCCAGc -3'
miRNA:   3'- -GUCUCCCGC-UGG-----GGCCGCUUgU-GGUC- -5'
2886 3' -60.6 NC_001493.1 + 85152 0.71 0.391738
Target:  5'- gCGGGGGGUGACCCCuGUGAuucUGCCGa -3'
miRNA:   3'- -GUCUCCCGCUGGGGcCGCUu--GUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.