Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2886 | 3' | -60.6 | NC_001493.1 | + | 61944 | 0.67 | 0.624578 |
Target: 5'- gAGAGGuCGAaUCCGGCGGAUcCCGGa -3' miRNA: 3'- gUCUCCcGCUgGGGCCGCUUGuGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 62418 | 0.66 | 0.684288 |
Target: 5'- ---cGGGCGugucggguugaACCCuCGGCGAACGaucCCGGa -3' miRNA: 3'- gucuCCCGC-----------UGGG-GCCGCUUGU---GGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 62562 | 0.66 | 0.707855 |
Target: 5'- aCGGGGGGCGAgguccaCCgGGCGGucACaaacccaagaguggaGCCAGg -3' miRNA: 3'- -GUCUCCCGCUg-----GGgCCGCU--UG---------------UGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 64913 | 0.76 | 0.212548 |
Target: 5'- cCAGAGGGCGACCCUcaacggGGCcAACggGCCGGu -3' miRNA: 3'- -GUCUCCCGCUGGGG------CCGcUUG--UGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 65995 | 0.66 | 0.65451 |
Target: 5'- cCGGAGGGaguggGACaCCGGC-AGCAUCGGg -3' miRNA: 3'- -GUCUCCCg----CUGgGGCCGcUUGUGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 70675 | 0.67 | 0.594694 |
Target: 5'- -cGGGcGGgGAUCCCGGCGGaucACACUg- -3' miRNA: 3'- guCUC-CCgCUGGGGCCGCU---UGUGGuc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 85152 | 0.71 | 0.391738 |
Target: 5'- gCGGGGGGUGACCCCuGUGAuucUGCCGa -3' miRNA: 3'- -GUCUCCCGCUGGGGcCGCUu--GUGGUc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 87329 | 0.66 | 0.664463 |
Target: 5'- aGGAGGuGCacucggugccGAUCCCGGgGGugACCAu -3' miRNA: 3'- gUCUCC-CG----------CUGGGGCCgCUugUGGUc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 89241 | 0.66 | 0.712724 |
Target: 5'- aCAGGGGGUgcgaccgagauggGAgCCCGaGCGuGgACCAGa -3' miRNA: 3'- -GUCUCCCG-------------CUgGGGC-CGCuUgUGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 91769 | 0.71 | 0.416851 |
Target: 5'- aCGGAGGGUGcGCCcgcgaCCGGCGGAgGaCCAGc -3' miRNA: 3'- -GUCUCCCGC-UGG-----GGCCGCUUgU-GGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 94697 | 0.66 | 0.703948 |
Target: 5'- -cGGGGGUacgUCCCGGUGggUGCCAc -3' miRNA: 3'- guCUCCCGcu-GGGGCCGCuuGUGGUc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 100307 | 0.67 | 0.604638 |
Target: 5'- uGGAgcacGGGCGGCCCCGGgGuugucGCgguucuucaaACCAGa -3' miRNA: 3'- gUCU----CCCGCUGGGGCCgCu----UG----------UGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 102158 | 0.67 | 0.644539 |
Target: 5'- gAGGGGgagccuucgguGCGACCCCuucgGGUGAagACGCCAc -3' miRNA: 3'- gUCUCC-----------CGCUGGGG----CCGCU--UGUGGUc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 103534 | 0.73 | 0.308477 |
Target: 5'- uGGAGuaccccGCGACCCCGGuCGucAACACCGGg -3' miRNA: 3'- gUCUCc-----CGCUGGGGCC-GC--UUGUGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 106705 | 0.67 | 0.614602 |
Target: 5'- -cGGGGGgGACCCgGGCGuauuuccCACCc- -3' miRNA: 3'- guCUCCCgCUGGGgCCGCuu-----GUGGuc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 107203 | 0.72 | 0.367632 |
Target: 5'- -uGAGGGCGGCCCCGGUucuGggUAaaGGc -3' miRNA: 3'- guCUCCCGCUGGGGCCG---CuuGUggUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 107227 | 0.66 | 0.684288 |
Target: 5'- aAGcGGGCG-CCCCGGCGGucgACCn- -3' miRNA: 3'- gUCuCCCGCuGGGGCCGCUug-UGGuc -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 108763 | 0.81 | 0.090612 |
Target: 5'- gGGAGGGUGGCCUgGG-GGACACCAGg -3' miRNA: 3'- gUCUCCCGCUGGGgCCgCUUGUGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 109137 | 0.69 | 0.516589 |
Target: 5'- gAGAGauGGCGA-CCCGGUGAAU-CCAGa -3' miRNA: 3'- gUCUC--CCGCUgGGGCCGCUUGuGGUC- -5' |
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2886 | 3' | -60.6 | NC_001493.1 | + | 111506 | 0.66 | 0.703948 |
Target: 5'- ---cGGGUG-CCggaCCGGUGAGCGCCAu -3' miRNA: 3'- gucuCCCGCuGG---GGCCGCUUGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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