miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 4708 0.66 0.694143
Target:  5'- cCGGGGGcGCGGCagCGGCGGGgguCACCGa -3'
miRNA:   3'- -GUCUCC-CGCUGggGCCGCUU---GUGGUc -5'
2886 3' -60.6 NC_001493.1 + 5525 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 5859 0.73 0.308477
Target:  5'- gAGAGGGCGuuuCCCgGGgGAGCuGCCAc -3'
miRNA:   3'- gUCUCCCGCu--GGGgCCgCUUG-UGGUc -5'
2886 3' -60.6 NC_001493.1 + 8279 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 8781 0.69 0.507091
Target:  5'- gAGGGGGCGuuuauuauUCCCGaGgGGACACCGc -3'
miRNA:   3'- gUCUCCCGCu-------GGGGC-CgCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 9741 0.68 0.535793
Target:  5'- uCGGAGGauccCGuCCCguCGGCGAGCACCGc -3'
miRNA:   3'- -GUCUCCc---GCuGGG--GCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 11149 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 13117 0.69 0.497667
Target:  5'- -cGAuGGCGAUCUCGGCGGcgGCCAGc -3'
miRNA:   3'- guCUcCCGCUGGGGCCGCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 13206 1.08 0.001079
Target:  5'- cCAGAGGGCGACCCCGGCGAACACCAGg -3'
miRNA:   3'- -GUCUCCCGCUGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 13253 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 16592 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 19752 0.67 0.624578
Target:  5'- gCGGAGGGUacGCUCCcGCGG-CACCGGg -3'
miRNA:   3'- -GUCUCCCGc-UGGGGcCGCUuGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 30946 0.68 0.584776
Target:  5'- uCGGGGuGGCGcUCCCGGC-AACGCCc- -3'
miRNA:   3'- -GUCUC-CCGCuGGGGCCGcUUGUGGuc -5'
2886 3' -60.6 NC_001493.1 + 39323 0.67 0.63456
Target:  5'- aGGGGGGCGACCaCGGaCGAcucgauCACgAGc -3'
miRNA:   3'- gUCUCCCGCUGGgGCC-GCUu-----GUGgUC- -5'
2886 3' -60.6 NC_001493.1 + 42358 0.77 0.174532
Target:  5'- aCGGGGGGUGuauCCCCGGUGAagugugcGCGCCAc -3'
miRNA:   3'- -GUCUCCCGCu--GGGGCCGCU-------UGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 42440 0.69 0.479062
Target:  5'- -cGAGaGGC--CUCCGGUGAAUACCAGa -3'
miRNA:   3'- guCUC-CCGcuGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 47686 0.67 0.644539
Target:  5'- gGGuAGGGUGGCCCCGGaccCGAugAaaCAGg -3'
miRNA:   3'- gUC-UCCCGCUGGGGCC---GCUugUg-GUC- -5'
2886 3' -60.6 NC_001493.1 + 48354 0.69 0.497667
Target:  5'- aCGGuGGacGCGACgCCGGCGGACagaaaccucuACCGGg -3'
miRNA:   3'- -GUCuCC--CGCUGgGGCCGCUUG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 56366 0.67 0.630567
Target:  5'- aCAGGGGGCGAUCCagaucggauacaaGGUGGgaaugauccGCACCu- -3'
miRNA:   3'- -GUCUCCCGCUGGGg------------CCGCU---------UGUGGuc -5'
2886 3' -60.6 NC_001493.1 + 58188 0.67 0.624578
Target:  5'- aAGGGGaCG-CUCCGGUGAugACCAc -3'
miRNA:   3'- gUCUCCcGCuGGGGCCGCUugUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.