miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 8279 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 13253 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 39323 0.67 0.63456
Target:  5'- aGGGGGGCGACCaCGGaCGAcucgauCACgAGc -3'
miRNA:   3'- gUCUCCCGCUGGgGCC-GCUu-----GUGgUC- -5'
2886 3' -60.6 NC_001493.1 + 128807 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 102158 0.67 0.644539
Target:  5'- gAGGGGgagccuucgguGCGACCCCuucgGGUGAagACGCCAc -3'
miRNA:   3'- gUCUCC-----------CGCUGGGG----CCGCU--UGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 11149 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 126704 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 94697 0.66 0.703948
Target:  5'- -cGGGGGUacgUCCCGGUGggUGCCAc -3'
miRNA:   3'- guCUCCCGcu-GGGGCCGCuuGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 89241 0.66 0.712724
Target:  5'- aCAGGGGGUgcgaccgagauggGAgCCCGaGCGuGgACCAGa -3'
miRNA:   3'- -GUCUCCCG-------------CUgGGGC-CGCuUgUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 61944 0.67 0.624578
Target:  5'- gAGAGGuCGAaUCCGGCGGAUcCCGGa -3'
miRNA:   3'- gUCUCCcGCUgGGGCCGCUUGuGGUC- -5'
2886 3' -60.6 NC_001493.1 + 58188 0.67 0.624578
Target:  5'- aAGGGGaCG-CUCCGGUGAugACCAc -3'
miRNA:   3'- gUCUCCcGCuGGGGCCGCUugUGGUc -5'
2886 3' -60.6 NC_001493.1 + 100307 0.67 0.604638
Target:  5'- uGGAgcacGGGCGGCCCCGGgGuugucGCgguucuucaaACCAGa -3'
miRNA:   3'- gUCU----CCCGCUGGGGCCgCu----UG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 123833 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 16592 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 132146 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 85152 0.71 0.391738
Target:  5'- gCGGGGGGUGACCCCuGUGAuucUGCCGa -3'
miRNA:   3'- -GUCUCCCGCUGGGGcCGCUu--GUGGUc -5'
2886 3' -60.6 NC_001493.1 + 42440 0.69 0.479062
Target:  5'- -cGAGaGGC--CUCCGGUGAAUACCAGa -3'
miRNA:   3'- guCUC-CCGcuGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 48354 0.69 0.497667
Target:  5'- aCGGuGGacGCGACgCCGGCGGACagaaaccucuACCGGg -3'
miRNA:   3'- -GUCuCC--CGCUGgGGCCGCUUG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 111646 0.69 0.507091
Target:  5'- uCGGAGGGgucCGACucuucgggcguaCCC-GCGAGCACCAGc -3'
miRNA:   3'- -GUCUCCC---GCUG------------GGGcCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 118741 0.68 0.559156
Target:  5'- cCGGAGGGUGuacaucgucgauaccACCCCGGCGcuCugguCCAu -3'
miRNA:   3'- -GUCUCCCGC---------------UGGGGCCGCuuGu---GGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.