miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 128760 1.08 0.001079
Target:  5'- cCAGAGGGCGACCCCGGCGAACACCAGg -3'
miRNA:   3'- -GUCUCCCGCUGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 13206 1.08 0.001079
Target:  5'- cCAGAGGGCGACCCCGGCGAACACCAGg -3'
miRNA:   3'- -GUCUCCCGCUGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 108763 0.81 0.090612
Target:  5'- gGGAGGGUGGCCUgGG-GGACACCAGg -3'
miRNA:   3'- gUCUCCCGCUGGGgCCgCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 42358 0.77 0.174532
Target:  5'- aCGGGGGGUGuauCCCCGGUGAagugugcGCGCCAc -3'
miRNA:   3'- -GUCUCCCGCu--GGGGCCGCU-------UGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 64913 0.76 0.212548
Target:  5'- cCAGAGGGCGACCCUcaacggGGCcAACggGCCGGu -3'
miRNA:   3'- -GUCUCCCGCUGGGG------CCGcUUG--UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 103534 0.73 0.308477
Target:  5'- uGGAGuaccccGCGACCCCGGuCGucAACACCGGg -3'
miRNA:   3'- gUCUCc-----CGCUGGGGCC-GC--UUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 5859 0.73 0.308477
Target:  5'- gAGAGGGCGuuuCCCgGGgGAGCuGCCAc -3'
miRNA:   3'- gUCUCCCGCu--GGGgCCgCUUG-UGGUc -5'
2886 3' -60.6 NC_001493.1 + 121413 0.73 0.308477
Target:  5'- gAGAGGGCGuuuCCCgGGgGAGCuGCCAc -3'
miRNA:   3'- gUCUCCCGCu--GGGgCCgCUUG-UGGUc -5'
2886 3' -60.6 NC_001493.1 + 8279 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 123833 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 16592 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 132146 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 107203 0.72 0.367632
Target:  5'- -uGAGGGCGGCCCCGGUucuGggUAaaGGc -3'
miRNA:   3'- guCUCCCGCUGGGGCCG---CuuGUggUC- -5'
2886 3' -60.6 NC_001493.1 + 85152 0.71 0.391738
Target:  5'- gCGGGGGGUGACCCCuGUGAuucUGCCGa -3'
miRNA:   3'- -GUCUCCCGCUGGGGcCGCUu--GUGGUc -5'
2886 3' -60.6 NC_001493.1 + 91769 0.71 0.416851
Target:  5'- aCGGAGGGUGcGCCcgcgaCCGGCGGAgGaCCAGc -3'
miRNA:   3'- -GUCUCCCGC-UGG-----GGCCGCUUgU-GGUC- -5'
2886 3' -60.6 NC_001493.1 + 5525 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 42440 0.69 0.479062
Target:  5'- -cGAGaGGC--CUCCGGUGAAUACCAGa -3'
miRNA:   3'- guCUC-CCGcuGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 121080 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 48354 0.69 0.497667
Target:  5'- aCGGuGGacGCGACgCCGGCGGACagaaaccucuACCGGg -3'
miRNA:   3'- -GUCuCC--CGCUGgGGCCGCUUG----------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 128671 0.69 0.497667
Target:  5'- -cGAuGGCGAUCUCGGCGGcgGCCAGc -3'
miRNA:   3'- guCUcCCGCUGGGGCCGCUugUGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.