miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 132146 0.72 0.367632
Target:  5'- gAGAGGGuCGaACCCUucgGGCGAACGgCGGu -3'
miRNA:   3'- gUCUCCC-GC-UGGGG---CCGCUUGUgGUC- -5'
2886 3' -60.6 NC_001493.1 + 128807 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 128760 1.08 0.001079
Target:  5'- cCAGAGGGCGACCCCGGCGAACACCAGg -3'
miRNA:   3'- -GUCUCCCGCUGGGGCCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 128671 0.69 0.497667
Target:  5'- -cGAuGGCGAUCUCGGCGGcgGCCAGc -3'
miRNA:   3'- guCUcCCGCUGGGGCCGCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 126704 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 125295 0.68 0.535793
Target:  5'- uCGGAGGauccCGuCCCguCGGCGAGCACCGc -3'
miRNA:   3'- -GUCUCCc---GCuGGG--GCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 124335 0.69 0.507091
Target:  5'- gAGGGGGCGuuuauuauUCCCGaGgGGACACCGc -3'
miRNA:   3'- gUCUCCCGCu-------GGGGC-CgCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 123833 0.72 0.344565
Target:  5'- -cGAuGGGUGggaGCCCCGGCGcGGCGCCAc -3'
miRNA:   3'- guCU-CCCGC---UGGGGCCGC-UUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 121413 0.73 0.308477
Target:  5'- gAGAGGGCGuuuCCCgGGgGAGCuGCCAc -3'
miRNA:   3'- gUCUCCCGCu--GGGgCCgCUUG-UGGUc -5'
2886 3' -60.6 NC_001493.1 + 121080 0.69 0.479062
Target:  5'- gGGAGGaGCGAgCCgCGGacCGGugACCAGg -3'
miRNA:   3'- gUCUCC-CGCUgGG-GCC--GCUugUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 118741 0.68 0.559156
Target:  5'- cCGGAGGGUGuacaucgucgauaccACCCCGGCGcuCugguCCAu -3'
miRNA:   3'- -GUCUCCCGC---------------UGGGGCCGCuuGu---GGUc -5'
2886 3' -60.6 NC_001493.1 + 114227 0.68 0.57489
Target:  5'- aCAGAGgaGGCacauguccauCCCCGGaaaGAGCACCGGu -3'
miRNA:   3'- -GUCUC--CCGcu--------GGGGCCg--CUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 111646 0.69 0.507091
Target:  5'- uCGGAGGGgucCGACucuucgggcguaCCC-GCGAGCACCAGc -3'
miRNA:   3'- -GUCUCCC---GCUG------------GGGcCGCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 111506 0.66 0.703948
Target:  5'- ---cGGGUG-CCggaCCGGUGAGCGCCAu -3'
miRNA:   3'- gucuCCCGCuGG---GGCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 109137 0.69 0.516589
Target:  5'- gAGAGauGGCGA-CCCGGUGAAU-CCAGa -3'
miRNA:   3'- gUCUC--CCGCUgGGGCCGCUUGuGGUC- -5'
2886 3' -60.6 NC_001493.1 + 108763 0.81 0.090612
Target:  5'- gGGAGGGUGGCCUgGG-GGACACCAGg -3'
miRNA:   3'- gUCUCCCGCUGGGgCCgCUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 107227 0.66 0.684288
Target:  5'- aAGcGGGCG-CCCCGGCGGucgACCn- -3'
miRNA:   3'- gUCuCCCGCuGGGGCCGCUug-UGGuc -5'
2886 3' -60.6 NC_001493.1 + 107203 0.72 0.367632
Target:  5'- -uGAGGGCGGCCCCGGUucuGggUAaaGGc -3'
miRNA:   3'- guCUCCCGCUGGGGCCG---CuuGUggUC- -5'
2886 3' -60.6 NC_001493.1 + 106705 0.67 0.614602
Target:  5'- -cGGGGGgGACCCgGGCGuauuuccCACCc- -3'
miRNA:   3'- guCUCCCgCUGGGgCCGCuu-----GUGGuc -5'
2886 3' -60.6 NC_001493.1 + 103534 0.73 0.308477
Target:  5'- uGGAGuaccccGCGACCCCGGuCGucAACACCGGg -3'
miRNA:   3'- gUCUCc-----CGCUGGGGCC-GC--UUGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.