miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 46285 0.68 0.660472
Target:  5'- uUGaGcCCCGGuGGcGGCGGucGAGCUCg -3'
miRNA:   3'- -ACcC-GGGUCuCCaUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 64920 0.67 0.700403
Target:  5'- aUGGGCuCCAG-GGUuagagaAGCcaGAGGGCUCg -3'
miRNA:   3'- -ACCCG-GGUCuCCA------UCGccUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 41358 0.73 0.386147
Target:  5'- aGGGCCUGGcGGUGGUGGccGuGGCUCu -3'
miRNA:   3'- aCCCGGGUCuCCAUCGCCuuC-UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 162410 0.72 0.437406
Target:  5'- gUGGGCCaGGAugguggggaaGGUAGCGGGAGAGa-- -3'
miRNA:   3'- -ACCCGGgUCU----------CCAUCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 19536 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 28770 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 99051 0.7 0.529723
Target:  5'- aGGGCCCGGcGGGUgucGGCGGugccguaguggugGAGGGCcCg -3'
miRNA:   3'- aCCCGGGUC-UCCA---UCGCC-------------UUCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 137987 0.69 0.580032
Target:  5'- gGGGCCCGGcGG-GGUGGggGGuGCg- -3'
miRNA:   3'- aCCCGGGUCuCCaUCGCCuuCU-CGag -5'
28861 5' -59.1 NC_006146.1 + 168544 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 40521 0.68 0.650413
Target:  5'- gGGGCCCAcguGUuuuccCGGggGAGCUCu -3'
miRNA:   3'- aCCCGGGUcucCAuc---GCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 168371 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 49891 0.66 0.795102
Target:  5'- gGGGUCCuccgguaggAGAGGUAGuCGGAGGccGC-Cg -3'
miRNA:   3'- aCCCGGG---------UCUCCAUC-GCCUUCu-CGaG- -5'
28861 5' -59.1 NC_006146.1 + 4670 0.67 0.739442
Target:  5'- cUGGGCCgGGuGGgcgaGGCGGggGcAGaUCa -3'
miRNA:   3'- -ACCCGGgUCuCCa---UCGCCuuC-UCgAG- -5'
28861 5' -59.1 NC_006146.1 + 16071 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 60957 0.66 0.758452
Target:  5'- uUGaGGCCCGGGGGUGGgGGGucacCUUg -3'
miRNA:   3'- -AC-CCGGGUCUCCAUCgCCUucucGAG- -5'
28861 5' -59.1 NC_006146.1 + 56239 0.66 0.767798
Target:  5'- cGGGUCCGcGGG-GGCGGAggcGGGGC-Cg -3'
miRNA:   3'- aCCCGGGUcUCCaUCGCCU---UCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 170175 0.66 0.767798
Target:  5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3'
miRNA:   3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 96755 0.66 0.777028
Target:  5'- -cGGCCUGGAGaaggAGCGG--GAGCUCu -3'
miRNA:   3'- acCCGGGUCUCca--UCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 168793 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 137814 0.66 0.789737
Target:  5'- gGGGUCCGccGGUccggugcaccuggaaGGCaGggGGGCUCg -3'
miRNA:   3'- aCCCGGGUcuCCA---------------UCGcCuuCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.