miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 55259 0.68 0.650413
Target:  5'- gGcGGCCCGGGcGaAGCGGcucguGGGGCUCg -3'
miRNA:   3'- aC-CCGGGUCUcCaUCGCCu----UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 45666 0.71 0.509461
Target:  5'- aGGGagaccgucuccgCCAG-GG-AGCGGAAGGGCUCu -3'
miRNA:   3'- aCCCg-----------GGUCuCCaUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 110390 0.76 0.251703
Target:  5'- uUGGGCCCAGuGGgAGCacccucgccgucGGggGAGCUg -3'
miRNA:   3'- -ACCCGGGUCuCCaUCG------------CCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 167661 0.68 0.650413
Target:  5'- gGGGCCCGGGGGcgugucccGCGacccGAGGGGCg- -3'
miRNA:   3'- aCCCGGGUCUCCau------CGC----CUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156516 0.77 0.223402
Target:  5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3'
miRNA:   3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5'
28861 5' -59.1 NC_006146.1 + 56239 0.66 0.767798
Target:  5'- cGGGUCCGcGGG-GGCGGAggcGGGGC-Cg -3'
miRNA:   3'- aCCCGGGUcUCCaUCGCCU---UCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 55969 0.74 0.339014
Target:  5'- --cGCCCAGGGGUAGCGGuuGGuCUCg -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUcGAG- -5'
28861 5' -59.1 NC_006146.1 + 60957 0.66 0.758452
Target:  5'- uUGaGGCCCGGGGGUGGgGGGucacCUUg -3'
miRNA:   3'- -AC-CCGGGUCUCCAUCgCCUucucGAG- -5'
28861 5' -59.1 NC_006146.1 + 25305 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 154573 0.67 0.739442
Target:  5'- uUGGauGUCC-GAGGagaAGCGGAAGAGgUCg -3'
miRNA:   3'- -ACC--CGGGuCUCCa--UCGCCUUCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 157599 0.67 0.728827
Target:  5'- cUGGuGCCCAGcacguggGGGUAgucGCGGgcGGGCa- -3'
miRNA:   3'- -ACC-CGGGUC-------UCCAU---CGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 169132 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 46285 0.68 0.660472
Target:  5'- uUGaGcCCCGGuGGcGGCGGucGAGCUCg -3'
miRNA:   3'- -ACcC-GGGUCuCCaUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 170407 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 167612 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 85571 0.7 0.560147
Target:  5'- gGGGCaCguGGGGUGGCaGGAGGcAGC-Cg -3'
miRNA:   3'- aCCCG-GguCUCCAUCG-CCUUC-UCGaG- -5'
28861 5' -59.1 NC_006146.1 + 126232 0.7 0.521001
Target:  5'- cGGGCCCGGAGucacugccgGGCGaGguGAGUUCg -3'
miRNA:   3'- aCCCGGGUCUCca-------UCGC-CuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 25692 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 16458 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156302 0.72 0.419883
Target:  5'- aGGGCaCAGAGGUGauguagaggcGCGGGuccgggauGGGGCUCa -3'
miRNA:   3'- aCCCGgGUCUCCAU----------CGCCU--------UCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.