miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 53492 0.68 0.650413
Target:  5'- aGGG-CCGGGGGU-GCGGucuGGCUCu -3'
miRNA:   3'- aCCCgGGUCUCCAuCGCCuucUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54045 0.66 0.795102
Target:  5'- cGGG-CCGGAuGUGGUGGAggacgAGAGCg- -3'
miRNA:   3'- aCCCgGGUCUcCAUCGCCU-----UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 54664 0.71 0.505638
Target:  5'- gGGGCCCcgucguagaccucccAGAcGGUGGCGuaaauGAGCUCg -3'
miRNA:   3'- aCCCGGG---------------UCU-CCAUCGCcuu--CUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54718 0.69 0.590032
Target:  5'- cGGGCCCGGgucaGGGcGGcCGaGggGAGaCUCa -3'
miRNA:   3'- aCCCGGGUC----UCCaUC-GC-CuuCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 54874 0.74 0.331576
Target:  5'- cGGGCCgUGGAGGccuuaaccGGcCGGAGGAGCUCu -3'
miRNA:   3'- aCCCGG-GUCUCCa-------UC-GCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54875 0.67 0.748996
Target:  5'- aUGGGCUgCGGGcGUAGCGGGGuccGCUCg -3'
miRNA:   3'- -ACCCGG-GUCUcCAUCGCCUUcu-CGAG- -5'
28861 5' -59.1 NC_006146.1 + 55259 0.68 0.650413
Target:  5'- gGcGGCCCGGGcGaAGCGGcucguGGGGCUCg -3'
miRNA:   3'- aC-CCGGGUCUcCaUCGCCu----UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 55969 0.74 0.339014
Target:  5'- --cGCCCAGGGGUAGCGGuuGGuCUCg -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUcGAG- -5'
28861 5' -59.1 NC_006146.1 + 56201 0.67 0.710268
Target:  5'- aGGGCCCGGGucucGCGGAcGAGC-Cg -3'
miRNA:   3'- aCCCGGGUCUccauCGCCUuCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 56239 0.66 0.767798
Target:  5'- cGGGUCCGcGGG-GGCGGAggcGGGGC-Cg -3'
miRNA:   3'- aCCCGGGUcUCCaUCGCCU---UCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 57010 0.74 0.331576
Target:  5'- gGGGCCauggccgaggaGGAGGUGGCGGuGGAGUg- -3'
miRNA:   3'- aCCCGGg----------UCUCCAUCGCCuUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 59574 0.7 0.540455
Target:  5'- aGGGCCaCGGcgcAGGUGGCGaucuGGAGGGCg- -3'
miRNA:   3'- aCCCGG-GUC---UCCAUCGC----CUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 60957 0.66 0.758452
Target:  5'- uUGaGGCCCGGGGGUGGgGGGucacCUUg -3'
miRNA:   3'- -AC-CCGGGUCUCCAUCgCCUucucGAG- -5'
28861 5' -59.1 NC_006146.1 + 64309 0.67 0.710268
Target:  5'- cGGGCCUGGGGccguacUGGCGGcAGuaAGCUCu -3'
miRNA:   3'- aCCCGGGUCUCc-----AUCGCCuUC--UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 64920 0.67 0.700403
Target:  5'- aUGGGCuCCAG-GGUuagagaAGCcaGAGGGCUCg -3'
miRNA:   3'- -ACCCG-GGUCuCCA------UCGccUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 67908 0.66 0.786132
Target:  5'- cUGGGCCUcGuGGgAGCcGAAGGuGCUCa -3'
miRNA:   3'- -ACCCGGGuCuCCaUCGcCUUCU-CGAG- -5'
28861 5' -59.1 NC_006146.1 + 68032 0.7 0.540455
Target:  5'- gGGGCCCGGccacgaccAGGUGGCGGcuGcccuGGCUg -3'
miRNA:   3'- aCCCGGGUC--------UCCAUCGCCuuC----UCGAg -5'
28861 5' -59.1 NC_006146.1 + 70713 0.69 0.610115
Target:  5'- gGGaGCUCAgGAGG-AGCGGggG-GCUUa -3'
miRNA:   3'- aCC-CGGGU-CUCCaUCGCCuuCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 71893 0.7 0.560147
Target:  5'- gGGGCUgguggcguUAGGGGUGGUGGAcacugagguGGGGCUg -3'
miRNA:   3'- aCCCGG--------GUCUCCAUCGCCU---------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 71935 0.66 0.795102
Target:  5'- gGuGGCgUUAGGGGUGGUGGAcacugagguGGGGCUg -3'
miRNA:   3'- aC-CCG-GGUCUCCAUCGCCU---------UCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.