miRNA display CGI


Results 21 - 40 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 28770 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 30921 0.66 0.777945
Target:  5'- gGuGGCCCAGGGGggagcccguuucgugGGCGGuucgcauGCUCu -3'
miRNA:   3'- aC-CCGGGUCUCCa--------------UCGCCuucu---CGAG- -5'
28861 5' -59.1 NC_006146.1 + 32142 0.74 0.317062
Target:  5'- gGGGUgCuGGGGUGGgGGAuGGGCUCa -3'
miRNA:   3'- aCCCGgGuCUCCAUCgCCUuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 33209 0.66 0.777028
Target:  5'- gGGGaggCCGGAGGgggAGcCGGGauGGGGCUg -3'
miRNA:   3'- aCCCg--GGUCUCCa--UC-GCCU--UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 34079 0.66 0.795102
Target:  5'- cGGGgCCGGGGGUccCGGggG-GCa- -3'
miRNA:   3'- aCCCgGGUCUCCAucGCCuuCuCGag -5'
28861 5' -59.1 NC_006146.1 + 39530 0.67 0.720069
Target:  5'- aUGGGCUgGG-GGaGGCGGcgcAAGGGCUg -3'
miRNA:   3'- -ACCCGGgUCuCCaUCGCC---UUCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 40521 0.68 0.650413
Target:  5'- gGGGCCCAcguGUuuuccCGGggGAGCUCu -3'
miRNA:   3'- aCCCGGGUcucCAuc---GCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 41065 0.67 0.700403
Target:  5'- gGGGCCUcGGGGUGGaGGGAG-GC-Ca -3'
miRNA:   3'- aCCCGGGuCUCCAUCgCCUUCuCGaG- -5'
28861 5' -59.1 NC_006146.1 + 41358 0.73 0.386147
Target:  5'- aGGGCCUGGcGGUGGUGGccGuGGCUCu -3'
miRNA:   3'- aCCCGGGUCuCCAUCGCCuuC-UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 42658 1.08 0.001633
Target:  5'- gUGGGCCCAGAGGUAGCGGAAGAGCUCc -3'
miRNA:   3'- -ACCCGGGUCUCCAUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 44563 0.66 0.757511
Target:  5'- gGGGCuCCGGGuGGcUGGCGGAaaugccaGGAGgaCg -3'
miRNA:   3'- aCCCG-GGUCU-CC-AUCGCCU-------UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 45666 0.71 0.509461
Target:  5'- aGGGagaccgucuccgCCAG-GG-AGCGGAAGGGCUCu -3'
miRNA:   3'- aCCCg-----------GGUCuCCaUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 46285 0.68 0.660472
Target:  5'- uUGaGcCCCGGuGGcGGCGGucGAGCUCg -3'
miRNA:   3'- -ACcC-GGGUCuCCaUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 47701 0.7 0.521001
Target:  5'- uUGGGCgUggaAGAGGUGG-GGAgcagcgcccGGAGCUCg -3'
miRNA:   3'- -ACCCGgG---UCUCCAUCgCCU---------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 47721 0.67 0.739442
Target:  5'- -cGGCCCucgagauuggGGAGGUcuUGGAGGGGCUg -3'
miRNA:   3'- acCCGGG----------UCUCCAucGCCUUCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 47988 0.74 0.330839
Target:  5'- gUGGGgUCAGAGGUggcugguGGCGGGAG-GCUUg -3'
miRNA:   3'- -ACCCgGGUCUCCA-------UCGCCUUCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 49891 0.66 0.795102
Target:  5'- gGGGUCCuccgguaggAGAGGUAGuCGGAGGccGC-Cg -3'
miRNA:   3'- aCCCGGG---------UCUCCAUC-GCCUUCu-CGaG- -5'
28861 5' -59.1 NC_006146.1 + 51212 0.66 0.785228
Target:  5'- aGGGCauCCAcgaggccGGGGUGGCGGguGAGgUUg -3'
miRNA:   3'- aCCCG--GGU-------CUCCAUCGCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 51453 0.66 0.758452
Target:  5'- aUGGGCgggaCUAGAGGU-GUGGAgaugggcgGGGGCUg -3'
miRNA:   3'- -ACCCG----GGUCUCCAuCGCCU--------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 51587 0.74 0.346572
Target:  5'- gGGGCCCGGGGG-AGCcaGAGGGGC-Ca -3'
miRNA:   3'- aCCCGGGUCUCCaUCGc-CUUCUCGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.