miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 154780 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 142469 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 145547 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 157858 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 148625 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 151702 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 41358 0.73 0.386147
Target:  5'- aGGGCCUGGcGGUGGUGGccGuGGCUCu -3'
miRNA:   3'- aCCCGGGUCuCCAUCGCCuuC-UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 128868 0.72 0.411282
Target:  5'- aGGGCCacgaAGAGGgGGCGGAGGcgGGCcCg -3'
miRNA:   3'- aCCCGGg---UCUCCaUCGCCUUC--UCGaG- -5'
28861 5' -59.1 NC_006146.1 + 156302 0.72 0.419883
Target:  5'- aGGGCaCAGAGGUGauguagaggcGCGGGuccgggauGGGGCUCa -3'
miRNA:   3'- aCCCGgGUCUCCAU----------CGCCU--------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 141424 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 144502 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 147580 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 150658 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 153735 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156813 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 140105 0.72 0.419883
Target:  5'- gGGGUggCGGAGGUGGUGGAAGAGg-- -3'
miRNA:   3'- aCCCGg-GUCUCCAUCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 162410 0.72 0.437406
Target:  5'- gUGGGCCaGGAugguggggaaGGUAGCGGGAGAGa-- -3'
miRNA:   3'- -ACCCGGgUCU----------CCAUCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 99572 0.72 0.455342
Target:  5'- gGGGUCCAgGAGGUAGaaGAcGGGCUUg -3'
miRNA:   3'- aCCCGGGU-CUCCAUCgcCUuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 14083 0.71 0.482034
Target:  5'- cGGGUCUGGAGGUcuagaguccccagGGCGGGaugucGGGGCUg -3'
miRNA:   3'- aCCCGGGUCUCCA-------------UCGCCU-----UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 13380 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.