Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28861 | 5' | -59.1 | NC_006146.1 | + | 51212 | 0.66 | 0.785228 |
Target: 5'- aGGGCauCCAcgaggccGGGGUGGCGGguGAGgUUg -3' miRNA: 3'- aCCCG--GGU-------CUCCAUCGCCuuCUCgAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 30921 | 0.66 | 0.777945 |
Target: 5'- gGuGGCCCAGGGGggagcccguuucgugGGCGGuucgcauGCUCu -3' miRNA: 3'- aC-CCGGGUCUCCa--------------UCGCCuucu---CGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 75808 | 0.66 | 0.777028 |
Target: 5'- cGGGCgCCGccuucGAGGcccuGCGGGacaugcaccaggGGAGCUCu -3' miRNA: 3'- aCCCG-GGU-----CUCCau--CGCCU------------UCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 138807 | 0.66 | 0.777028 |
Target: 5'- aUGGGCCCGG-GGU--UGGu-GAGCUa -3' miRNA: 3'- -ACCCGGGUCuCCAucGCCuuCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 96755 | 0.66 | 0.777028 |
Target: 5'- -cGGCCUGGAGaaggAGCGG--GAGCUCu -3' miRNA: 3'- acCCGGGUCUCca--UCGCCuuCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 129245 | 0.66 | 0.777028 |
Target: 5'- cGGGCCCAGgugaggcgcgaGGGUcAG-GGAuguGGGGCUg -3' miRNA: 3'- aCCCGGGUC-----------UCCA-UCgCCU---UCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 33209 | 0.66 | 0.777028 |
Target: 5'- gGGGaggCCGGAGGgggAGcCGGGauGGGGCUg -3' miRNA: 3'- aCCCg--GGUCUCCa--UC-GCCU--UCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 88224 | 0.66 | 0.777028 |
Target: 5'- uUGGGCCUguguuugcucGGGGGUcGGUGGuacGGGCUg -3' miRNA: 3'- -ACCCGGG----------UCUCCA-UCGCCuu-CUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 115770 | 0.66 | 0.777028 |
Target: 5'- gGGGUCCcgauaaacauGGAGGUGGaGGcccuGGAGCUg -3' miRNA: 3'- aCCCGGG----------UCUCCAUCgCCu---UCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 101690 | 0.66 | 0.775192 |
Target: 5'- cGGGCggcgCUAGAGGgggggagagagcAGCGGggGuuuGGCUCc -3' miRNA: 3'- aCCCG----GGUCUCCa-----------UCGCCuuC---UCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 94408 | 0.66 | 0.771505 |
Target: 5'- gUGGGCCguGAGGcuUGGCaggccgaccaGGGucuuguacugggcaaGGGGCUCg -3' miRNA: 3'- -ACCCGGguCUCC--AUCG----------CCU---------------UCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 169244 | 0.66 | 0.767798 |
Target: 5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3' miRNA: 3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 170175 | 0.66 | 0.767798 |
Target: 5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3' miRNA: 3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 85131 | 0.66 | 0.767798 |
Target: 5'- aGGGCCUcuGGGaUGGcCGGggGGGUa- -3' miRNA: 3'- aCCCGGGucUCC-AUC-GCCuuCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 168312 | 0.66 | 0.767798 |
Target: 5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3' miRNA: 3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 167380 | 0.66 | 0.767798 |
Target: 5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3' miRNA: 3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 56239 | 0.66 | 0.767798 |
Target: 5'- cGGGUCCGcGGG-GGCGGAggcGGGGC-Cg -3' miRNA: 3'- aCCCGGGUcUCCaUCGCCU---UCUCGaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 161078 | 0.66 | 0.767798 |
Target: 5'- aGGGCCC-GAGaucaUGGUGGAAuGGUUCa -3' miRNA: 3'- aCCCGGGuCUCc---AUCGCCUUcUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 151163 | 0.66 | 0.758452 |
Target: 5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3' miRNA: 3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 51453 | 0.66 | 0.758452 |
Target: 5'- aUGGGCgggaCUAGAGGU-GUGGAgaugggcgGGGGCUg -3' miRNA: 3'- -ACCCG----GGUCUCCAuCGCCU--------UCUCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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