miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 145007 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 148085 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 151163 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 154241 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 157319 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 60957 0.66 0.758452
Target:  5'- uUGaGGCCCGGGGGUGGgGGGucacCUUg -3'
miRNA:   3'- -AC-CCGGGUCUCCAUCgCCUucucGAG- -5'
28861 5' -59.1 NC_006146.1 + 44563 0.66 0.757511
Target:  5'- gGGGCuCCGGGuGGcUGGCGGAaaugccaGGAGgaCg -3'
miRNA:   3'- aCCCG-GGUCU-CC-AUCGCCU-------UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 138389 0.67 0.748996
Target:  5'- gGGGCUCucaguGAGauGUGGaGGAGGAGCUa -3'
miRNA:   3'- aCCCGGGu----CUC--CAUCgCCUUCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 124593 0.67 0.748996
Target:  5'- -cGGCCgAGAGGaagAGgGGcucGAGCUCg -3'
miRNA:   3'- acCCGGgUCUCCa--UCgCCuu-CUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54875 0.67 0.748996
Target:  5'- aUGGGCUgCGGGcGUAGCGGGGuccGCUCg -3'
miRNA:   3'- -ACCCGG-GUCUcCAUCGCCUUcu-CGAG- -5'
28861 5' -59.1 NC_006146.1 + 20191 0.67 0.748996
Target:  5'- aGGGCCCccGGGGgcGCaGGAG-GCUg -3'
miRNA:   3'- aCCCGGGu-CUCCauCGcCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 124518 0.67 0.748996
Target:  5'- -cGGCCCuggcGAGGgacgggGGCcuGGggGAGCUg -3'
miRNA:   3'- acCCGGGu---CUCCa-----UCG--CCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 12993 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 25305 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 4670 0.67 0.739442
Target:  5'- cUGGGCCgGGuGGgcgaGGCGGggGcAGaUCa -3'
miRNA:   3'- -ACCCGGgUCuCCa---UCGCCuuC-UCgAG- -5'
28861 5' -59.1 NC_006146.1 + 154573 0.67 0.739442
Target:  5'- uUGGauGUCC-GAGGagaAGCGGAAGAGgUCg -3'
miRNA:   3'- -ACC--CGGGuCUCCa--UCGCCUUCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 16071 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 47721 0.67 0.739442
Target:  5'- -cGGCCCucgagauuggGGAGGUcuUGGAGGGGCUg -3'
miRNA:   3'- acCCGGG----------UCUCCAucGCCUUCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 28383 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 19149 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.