miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 25692 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 22614 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 19536 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 16458 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 13380 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 15056 0.71 0.492356
Target:  5'- cGGGCCUgcgaGGAGGcacUGGCGG--GGGCUCc -3'
miRNA:   3'- aCCCGGG----UCUCC---AUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54664 0.71 0.505638
Target:  5'- gGGGCCCcgucguagaccucccAGAcGGUGGCGuaaauGAGCUCg -3'
miRNA:   3'- aCCCGGG---------------UCU-CCAUCGCcuu--CUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 45666 0.71 0.509461
Target:  5'- aGGGagaccgucuccgCCAG-GG-AGCGGAAGGGCUCu -3'
miRNA:   3'- aCCCg-----------GGUCuCCaUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 14842 0.71 0.511377
Target:  5'- cGGGCCCGG-GGccGCGGGAG-GC-Cg -3'
miRNA:   3'- aCCCGGGUCuCCauCGCCUUCuCGaG- -5'
28861 5' -59.1 NC_006146.1 + 126232 0.7 0.521001
Target:  5'- cGGGCCCGGAGucacugccgGGCGaGguGAGUUCg -3'
miRNA:   3'- aCCCGGGUCUCca-------UCGC-CuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 47701 0.7 0.521001
Target:  5'- uUGGGCgUggaAGAGGUGG-GGAgcagcgcccGGAGCUCg -3'
miRNA:   3'- -ACCCGgG---UCUCCAUCgCCU---------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 99051 0.7 0.529723
Target:  5'- aGGGCCCGGcGGGUgucGGCGGugccguaguggugGAGGGCcCg -3'
miRNA:   3'- aCCCGGGUC-UCCA---UCGCC-------------UUCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 128886 0.7 0.530695
Target:  5'- cGGGCCCAGAGGgAGU-----AGCUCg -3'
miRNA:   3'- aCCCGGGUCUCCaUCGccuucUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 59574 0.7 0.540455
Target:  5'- aGGGCCaCGGcgcAGGUGGCGaucuGGAGGGCg- -3'
miRNA:   3'- aCCCGG-GUC---UCCAUCGC----CUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 68032 0.7 0.540455
Target:  5'- gGGGCCCGGccacgaccAGGUGGCGGcuGcccuGGCUg -3'
miRNA:   3'- aCCCGGGUC--------UCCAUCGCCuuC----UCGAg -5'
28861 5' -59.1 NC_006146.1 + 121667 0.7 0.540455
Target:  5'- cUGGaCCCGGAGGU-GCaGGAGGGCaUCg -3'
miRNA:   3'- -ACCcGGGUCUCCAuCGcCUUCUCG-AG- -5'
28861 5' -59.1 NC_006146.1 + 71893 0.7 0.560147
Target:  5'- gGGGCUgguggcguUAGGGGUGGUGGAcacugagguGGGGCUg -3'
miRNA:   3'- aCCCGG--------GUCUCCAUCGCCU---------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 85571 0.7 0.560147
Target:  5'- gGGGCaCguGGGGUGGCaGGAGGcAGC-Cg -3'
miRNA:   3'- aCCCG-GguCUCCAUCG-CCUUC-UCGaG- -5'
28861 5' -59.1 NC_006146.1 + 73390 0.7 0.560147
Target:  5'- cGGGCCUucacgugggagcGGAGGUcGCGGAuguuGAGgUCc -3'
miRNA:   3'- aCCCGGG------------UCUCCAuCGCCUu---CUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 92001 0.7 0.574049
Target:  5'- cGGGCCCGGccuggggcugcugcuGGGgGGCGGGcccggccuGGGGCUg -3'
miRNA:   3'- aCCCGGGUC---------------UCCaUCGCCU--------UCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.