miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 16071 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 145747 0.67 0.729796
Target:  5'- cGGGCaggauCUGGAGGUAGaGGuAGGGGUUCu -3'
miRNA:   3'- aCCCG-----GGUCUCCAUCgCC-UUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 157599 0.67 0.728827
Target:  5'- cUGGuGCCCAGcacguggGGGUAgucGCGGgcGGGCa- -3'
miRNA:   3'- -ACC-CGGGUC-------UCCAU---CGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 89973 0.67 0.720069
Target:  5'- aUGGGCCUGGcuGGgc-CGGGAG-GCUCg -3'
miRNA:   3'- -ACCCGGGUCu-CCaucGCCUUCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 14744 0.67 0.720069
Target:  5'- gGGGCUCuuugagaacGAGGUcaGGCaGGcGGGGCUCg -3'
miRNA:   3'- aCCCGGGu--------CUCCA--UCG-CCuUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 39530 0.67 0.720069
Target:  5'- aUGGGCUgGG-GGaGGCGGcgcAAGGGCUg -3'
miRNA:   3'- -ACCCGGgUCuCCaUCGCC---UUCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 64309 0.67 0.710268
Target:  5'- cGGGCCUGGGGccguacUGGCGGcAGuaAGCUCu -3'
miRNA:   3'- aCCCGGGUCUCc-----AUCGCCuUC--UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 56201 0.67 0.710268
Target:  5'- aGGGCCCGGGucucGCGGAcGAGC-Cg -3'
miRNA:   3'- aCCCGGGUCUccauCGCCUuCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 92300 0.67 0.704356
Target:  5'- cGGGCCCGGccuggggcugcugcuGGGgGGCGGGcccggccuGGGGCa- -3'
miRNA:   3'- aCCCGGGUC---------------UCCaUCGCCU--------UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 92061 0.67 0.704356
Target:  5'- cGGGCCCGGccuggggcugcugcuGGGgGGCGGcccggccuGGGGCUg -3'
miRNA:   3'- aCCCGGGUC---------------UCCaUCGCCu-------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 156028 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 143716 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 64920 0.67 0.700403
Target:  5'- aUGGGCuCCAG-GGUuagagaAGCcaGAGGGCUCg -3'
miRNA:   3'- -ACCCG-GGUCuCCA------UCGccUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 149872 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 152950 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 146794 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 41065 0.67 0.700403
Target:  5'- gGGGCCUcGGGGUGGaGGGAG-GC-Ca -3'
miRNA:   3'- aCCCGGGuCUCCAUCgCCUUCuCGaG- -5'
28861 5' -59.1 NC_006146.1 + 169132 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 167268 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 168200 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.