miRNA display CGI


Results 21 - 40 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 85571 0.7 0.560147
Target:  5'- gGGGCaCguGGGGUGGCaGGAGGcAGC-Cg -3'
miRNA:   3'- aCCCG-GguCUCCAUCG-CCUUC-UCGaG- -5'
28861 5' -59.1 NC_006146.1 + 126232 0.7 0.521001
Target:  5'- cGGGCCCGGAGucacugccgGGCGaGguGAGUUCg -3'
miRNA:   3'- aCCCGGGUCUCca-------UCGC-CuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 13380 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 47988 0.74 0.330839
Target:  5'- gUGGGgUCAGAGGUggcugguGGCGGGAG-GCUUg -3'
miRNA:   3'- -ACCCgGGUCUCCA-------UCGCCUUCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 96579 0.68 0.650413
Target:  5'- gGGGUCaCuGAcGUGGUGGAGGAGUUUa -3'
miRNA:   3'- aCCCGG-GuCUcCAUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 168544 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 45666 0.71 0.509461
Target:  5'- aGGGagaccgucuccgCCAG-GG-AGCGGAAGGGCUCu -3'
miRNA:   3'- aCCCg-----------GGUCuCCaUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 110390 0.76 0.251703
Target:  5'- uUGGGCCCAGuGGgAGCacccucgccgucGGggGAGCUg -3'
miRNA:   3'- -ACCCGGGUCuCCaUCG------------CCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 167612 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 156516 0.77 0.223402
Target:  5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3'
miRNA:   3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5'
28861 5' -59.1 NC_006146.1 + 47701 0.7 0.521001
Target:  5'- uUGGGCgUggaAGAGGUGG-GGAgcagcgcccGGAGCUCg -3'
miRNA:   3'- -ACCCGgG---UCUCCAUCgCCU---------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 137987 0.69 0.580032
Target:  5'- gGGGCCCGGcGG-GGUGGggGGuGCg- -3'
miRNA:   3'- aCCCGGGUCuCCaUCGCCuuCU-CGag -5'
28861 5' -59.1 NC_006146.1 + 25692 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 16458 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156302 0.72 0.419883
Target:  5'- aGGGCaCAGAGGUGauguagaggcGCGGGuccgggauGGGGCUCa -3'
miRNA:   3'- aCCCGgGUCUCCAU----------CGCCU--------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 55969 0.74 0.339014
Target:  5'- --cGCCCAGGGGUAGCGGuuGGuCUCg -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUcGAG- -5'
28861 5' -59.1 NC_006146.1 + 169132 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 46285 0.68 0.660472
Target:  5'- uUGaGcCCCGGuGGcGGCGGucGAGCUCg -3'
miRNA:   3'- -ACcC-GGGUCuCCaUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 53492 0.68 0.650413
Target:  5'- aGGG-CCGGGGGU-GCGGucuGGCUCu -3'
miRNA:   3'- aCCCgGGUCUCCAuCGCCuucUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 169476 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.