miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 99147 0.8 0.15049
Target:  5'- gGGGCuCCAGcgaccggcAGGUGGCGGAGGgccAGCUCg -3'
miRNA:   3'- aCCCG-GGUC--------UCCAUCGCCUUC---UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 45666 0.71 0.509461
Target:  5'- aGGGagaccgucuccgCCAG-GG-AGCGGAAGGGCUCu -3'
miRNA:   3'- aCCCg-----------GGUCuCCaUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 126232 0.7 0.521001
Target:  5'- cGGGCCCGGAGucacugccgGGCGaGguGAGUUCg -3'
miRNA:   3'- aCCCGGGUCUCca-------UCGC-CuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 170234 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 55969 0.74 0.339014
Target:  5'- --cGCCCAGGGGUAGCGGuuGGuCUCg -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUcGAG- -5'
28861 5' -59.1 NC_006146.1 + 41358 0.73 0.386147
Target:  5'- aGGGCCUGGcGGUGGUGGccGuGGCUCu -3'
miRNA:   3'- aCCCGGGUCuCCAUCGCCuuC-UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 156302 0.72 0.419883
Target:  5'- aGGGCaCAGAGGUGauguagaggcGCGGGuccgggauGGGGCUCa -3'
miRNA:   3'- aCCCGgGUCUCCAU----------CGCCU--------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 162410 0.72 0.437406
Target:  5'- gUGGGCCaGGAugguggggaaGGUAGCGGGAGAGa-- -3'
miRNA:   3'- -ACCCGGgUCU----------CCAUCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 16458 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 54664 0.71 0.505638
Target:  5'- gGGGCCCcgucguagaccucccAGAcGGUGGCGuaaauGAGCUCg -3'
miRNA:   3'- aCCCGGG---------------UCU-CCAUCGCcuu--CUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 22614 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 13380 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156516 0.77 0.223402
Target:  5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3'
miRNA:   3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5'
28861 5' -59.1 NC_006146.1 + 25692 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 110390 0.76 0.251703
Target:  5'- uUGGGCCCAGuGGgAGCacccucgccgucGGggGAGCUg -3'
miRNA:   3'- -ACCCGGGUCuCCaUCG------------CCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 99572 0.72 0.455342
Target:  5'- gGGGUCCAgGAGGUAGaaGAcGGGCUUg -3'
miRNA:   3'- aCCCGGGU-CUCCAUCgcCUuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 28770 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 47701 0.7 0.521001
Target:  5'- uUGGGCgUggaAGAGGUGG-GGAgcagcgcccGGAGCUCg -3'
miRNA:   3'- -ACCCGgG---UCUCCAUCgCCU---------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 47988 0.74 0.330839
Target:  5'- gUGGGgUCAGAGGUggcugguGGCGGGAG-GCUUg -3'
miRNA:   3'- -ACCCgGGUCUCCA-------UCGCCUUCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 128868 0.72 0.411282
Target:  5'- aGGGCCacgaAGAGGgGGCGGAGGcgGGCcCg -3'
miRNA:   3'- aCCCGGg---UCUCCaUCGCCUUC--UCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.