miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 167380 0.66 0.767798
Target:  5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3'
miRNA:   3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 167268 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 166879 0.66 0.786132
Target:  5'- gGGGagCGGAGGgcGaGGAGGAGCg- -3'
miRNA:   3'- aCCCggGUCUCCauCgCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 162410 0.72 0.437406
Target:  5'- gUGGGCCaGGAugguggggaaGGUAGCGGGAGAGa-- -3'
miRNA:   3'- -ACCCGGgUCU----------CCAUCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 161744 0.74 0.324258
Target:  5'- --aGCCCGGGGGUGGCGGcuGAGgUCc -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 161078 0.66 0.767798
Target:  5'- aGGGCCC-GAGaucaUGGUGGAAuGGUUCa -3'
miRNA:   3'- aCCCGGGuCUCc---AUCGCCUUcUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 157858 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 157599 0.67 0.728827
Target:  5'- cUGGuGCCCAGcacguggGGGUAgucGCGGgcGGGCa- -3'
miRNA:   3'- -ACC-CGGGUC-------UCCAU---CGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 157584 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 157319 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 156861 0.68 0.689488
Target:  5'- aGGGCCUggccugcGGGGGacagGGUGGAcGGGGCUg -3'
miRNA:   3'- aCCCGGG-------UCUCCa---UCGCCU-UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 156813 0.72 0.419883
Target:  5'- cGGGCCUGG-GGUGGCcggGGAGGGGUg- -3'
miRNA:   3'- aCCCGGGUCuCCAUCG---CCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 156516 0.77 0.223402
Target:  5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3'
miRNA:   3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5'
28861 5' -59.1 NC_006146.1 + 156302 0.72 0.419883
Target:  5'- aGGGCaCAGAGGUGauguagaggcGCGGGuccgggauGGGGCUCa -3'
miRNA:   3'- aCCCGgGUCUCCAU----------CGCCU--------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 156028 0.67 0.700403
Target:  5'- gGGGCCuCGGAGGgccUGGAGG-GCUa -3'
miRNA:   3'- aCCCGG-GUCUCCaucGCCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 154780 0.74 0.35425
Target:  5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3'
miRNA:   3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 154573 0.67 0.739442
Target:  5'- uUGGauGUCC-GAGGagaAGCGGAAGAGgUCg -3'
miRNA:   3'- -ACC--CGGGuCUCCa--UCGCCUUCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 154506 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 154241 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 153783 0.68 0.689488
Target:  5'- aGGGCCUggccugcGGGGGacagGGUGGAcGGGGCUg -3'
miRNA:   3'- aCCCGGG-------UCUCCa---UCGCCU-UCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.