miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 170407 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 170234 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 170175 0.66 0.767798
Target:  5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3'
miRNA:   3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 170064 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 169725 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 169476 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 169303 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 169244 0.66 0.767798
Target:  5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3'
miRNA:   3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 169132 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 168793 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 168544 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 168371 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 168312 0.66 0.767798
Target:  5'- gGGGCUgAGGGGgcucccgagGGCGGGgccGGGGCc- -3'
miRNA:   3'- aCCCGGgUCUCCa--------UCGCCU---UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 168200 0.68 0.694457
Target:  5'- aGGGCCCGGGgccgcgcguggggauGGccGGCGGGAGGGg-- -3'
miRNA:   3'- aCCCGGGUCU---------------CCa-UCGCCUUCUCgag -5'
28861 5' -59.1 NC_006146.1 + 167870 0.68 0.64034
Target:  5'- gGGGCaCGGAGGU-GCGGuGAGGuuGCUCc -3'
miRNA:   3'- aCCCGgGUCUCCAuCGCC-UUCU--CGAG- -5'
28861 5' -59.1 NC_006146.1 + 167861 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 167754 0.69 0.610115
Target:  5'- aGGGCgCAGGGGccgGGUGGgcGcgcauGGCUCg -3'
miRNA:   3'- aCCCGgGUCUCCa--UCGCCuuC-----UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 167661 0.68 0.650413
Target:  5'- gGGGCCCGGGGGcgugucccGCGacccGAGGGGCg- -3'
miRNA:   3'- aCCCGGGUCUCCau------CGC----CUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 167612 0.69 0.600062
Target:  5'- gGGGCCuCGGGGGcGGaGGggGGGgUCc -3'
miRNA:   3'- aCCCGG-GUCUCCaUCgCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 167439 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.