Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28863 | 3' | -51.7 | NC_006146.1 | + | 98851 | 0.67 | 0.960795 |
Target: 5'- --gGGaAGAauGGCGGCGGGGUGCc -3' miRNA: 3'- ucgUCaUCU--CUGCCGCUCCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 51718 | 0.67 | 0.960795 |
Target: 5'- cGGUGGUGGAGGacaUGGgGAGGcgGCGc -3' miRNA: 3'- -UCGUCAUCUCU---GCCgCUCCa-CGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 126007 | 0.67 | 0.956968 |
Target: 5'- uGGgAGUGGGGGCGGUGGGcuucUGCu -3' miRNA: 3'- -UCgUCAUCUCUGCCGCUCc---ACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 113719 | 0.68 | 0.952893 |
Target: 5'- cGGCAGccGGGACGGUGAagucguggaaGGUaGCGg -3' miRNA: 3'- -UCGUCauCUCUGCCGCU----------CCA-CGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 140082 | 0.68 | 0.952893 |
Target: 5'- gGGUGGUGGAGGgGGUggaaGAGGgggugGCGg -3' miRNA: 3'- -UCGUCAUCUCUgCCG----CUCCa----CGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 42373 | 0.68 | 0.952893 |
Target: 5'- cGCcGccAGGGugGGCGAGGgGCGc -3' miRNA: 3'- uCGuCa-UCUCugCCGCUCCaCGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 122604 | 0.68 | 0.952893 |
Target: 5'- cGaCGGUGGAG--GGCGAGGgGCGg -3' miRNA: 3'- uC-GUCAUCUCugCCGCUCCaCGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 40875 | 0.68 | 0.952472 |
Target: 5'- cGCGGUccGGAGACGGagcCGGGGccucgucUGCGa -3' miRNA: 3'- uCGUCA--UCUCUGCC---GCUCC-------ACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 91108 | 0.68 | 0.948567 |
Target: 5'- uGGCAGcGGAGGgaGGUGAgGGUGCc -3' miRNA: 3'- -UCGUCaUCUCUg-CCGCU-CCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 12803 | 0.68 | 0.943984 |
Target: 5'- gGGCGgacGUAcGGACGGCGGcugccGGUGCGc -3' miRNA: 3'- -UCGU---CAUcUCUGCCGCU-----CCACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 90005 | 0.68 | 0.943512 |
Target: 5'- gAGCA--GGAGugGGUucgggaaGAGGUGCa -3' miRNA: 3'- -UCGUcaUCUCugCCG-------CUCCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 90640 | 0.68 | 0.939143 |
Target: 5'- gGGUGGUuugGGAGgcgccGCGGCGAGGgugGCa -3' miRNA: 3'- -UCGUCA---UCUC-----UGCCGCUCCa--CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 40269 | 0.68 | 0.934041 |
Target: 5'- cGUAGUAGGGA-GGCGcGG-GCGg -3' miRNA: 3'- uCGUCAUCUCUgCCGCuCCaCGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 35882 | 0.68 | 0.934041 |
Target: 5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3' miRNA: 3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 41295 | 0.68 | 0.934041 |
Target: 5'- cGGCGacGGAGACGGCgGAGGcaugGCGu -3' miRNA: 3'- -UCGUcaUCUCUGCCG-CUCCa---CGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 151398 | 0.69 | 0.928677 |
Target: 5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3' miRNA: 3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 128654 | 0.69 | 0.911008 |
Target: 5'- cGCAuucGGGGACGGCGGGGacggGCa -3' miRNA: 3'- uCGUca-UCUCUGCCGCUCCa---CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 2475 | 0.69 | 0.904595 |
Target: 5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3' miRNA: 3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 40066 | 0.7 | 0.897925 |
Target: 5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3' miRNA: 3'- -UCGU---CAucUCUGCCGCUCCACgC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 56838 | 0.7 | 0.891002 |
Target: 5'- aGGCGGccucuGGCGGCGGGG-GCGg -3' miRNA: 3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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