miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 51086 0.66 0.978906
Target:  5'- aGGCAGUGGGGAUGuuGAGGa--- -3'
miRNA:   3'- -UCGUCAUCUCUGCcgCUCCacgc -5'
28863 3' -51.7 NC_006146.1 + 51173 0.71 0.835841
Target:  5'- gGGCuGUGGAGcCGGgGAGGcUGCu -3'
miRNA:   3'- -UCGuCAUCUCuGCCgCUCC-ACGc -5'
28863 3' -51.7 NC_006146.1 + 51466 0.77 0.508463
Target:  5'- gAGguGUGGAGAUgGGCGGGGgcUGCGg -3'
miRNA:   3'- -UCguCAUCUCUG-CCGCUCC--ACGC- -5'
28863 3' -51.7 NC_006146.1 + 51718 0.67 0.960795
Target:  5'- cGGUGGUGGAGGacaUGGgGAGGcgGCGc -3'
miRNA:   3'- -UCGUCAUCUCU---GCCgCUCCa-CGC- -5'
28863 3' -51.7 NC_006146.1 + 54804 0.66 0.983272
Target:  5'- gGGCAGcucguUGGAGAggaccCGGCGgAGG-GCGg -3'
miRNA:   3'- -UCGUC-----AUCUCU-----GCCGC-UCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 56838 0.7 0.891002
Target:  5'- aGGCGGccucuGGCGGCGGGG-GCGg -3'
miRNA:   3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 60477 0.66 0.975647
Target:  5'- gAGCGGUgagaggccGGGgggccagcucccccGACGGCGAgGGUGCu -3'
miRNA:   3'- -UCGUCA--------UCU--------------CUGCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 68270 0.73 0.750816
Target:  5'- cGCGGUGGAGG-GGCGGGGcguUGUGa -3'
miRNA:   3'- uCGUCAUCUCUgCCGCUCC---ACGC- -5'
28863 3' -51.7 NC_006146.1 + 68743 0.67 0.970548
Target:  5'- gGGUGGUGGAGGCccaGGUGGccaagcuucaggcGGUGCGc -3'
miRNA:   3'- -UCGUCAUCUCUG---CCGCU-------------CCACGC- -5'
28863 3' -51.7 NC_006146.1 + 70962 0.73 0.720034
Target:  5'- uGCGGaGGAGGCGGgagcgGGGGUGCGa -3'
miRNA:   3'- uCGUCaUCUCUGCCg----CUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 75479 0.73 0.730392
Target:  5'- uGUGGUcacGGGGACGGCGGGGgccgGCa -3'
miRNA:   3'- uCGUCA---UCUCUGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 77832 0.75 0.645793
Target:  5'- cGGCGGagggGGGGGCGGgGGGGUGgGa -3'
miRNA:   3'- -UCGUCa---UCUCUGCCgCUCCACgC- -5'
28863 3' -51.7 NC_006146.1 + 90005 0.68 0.943512
Target:  5'- gAGCA--GGAGugGGUucgggaaGAGGUGCa -3'
miRNA:   3'- -UCGUcaUCUCugCCG-------CUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 90093 0.7 0.891002
Target:  5'- gAGCAGUGGAGGCaGCGgagcAGGagGCa -3'
miRNA:   3'- -UCGUCAUCUCUGcCGC----UCCa-CGc -5'
28863 3' -51.7 NC_006146.1 + 90640 0.68 0.939143
Target:  5'- gGGUGGUuugGGAGgcgccGCGGCGAGGgugGCa -3'
miRNA:   3'- -UCGUCA---UCUC-----UGCCGCUCCa--CGc -5'
28863 3' -51.7 NC_006146.1 + 91108 0.68 0.948567
Target:  5'- uGGCAGcGGAGGgaGGUGAgGGUGCc -3'
miRNA:   3'- -UCGUCaUCUCUg-CCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 98851 0.67 0.960795
Target:  5'- --gGGaAGAauGGCGGCGGGGUGCc -3'
miRNA:   3'- ucgUCaUCU--CUGCCGCUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 100010 0.81 0.351088
Target:  5'- gAGCGGgcacgucgGGAGGCGGCGGGGUccGCGg -3'
miRNA:   3'- -UCGUCa-------UCUCUGCCGCUCCA--CGC- -5'
28863 3' -51.7 NC_006146.1 + 100242 0.66 0.978906
Target:  5'- uGGCAGUGGGGGCGuucacgcaCGGGG-GCu -3'
miRNA:   3'- -UCGUCAUCUCUGCc-------GCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 113719 0.68 0.952893
Target:  5'- cGGCAGccGGGACGGUGAagucguggaaGGUaGCGg -3'
miRNA:   3'- -UCGUCauCUCUGCCGCU----------CCA-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.