miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 2475 0.69 0.904595
Target:  5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3'
miRNA:   3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 6113 0.7 0.868748
Target:  5'- aGGCaacGGUGGAGGCGGUGGGGa--- -3'
miRNA:   3'- -UCG---UCAUCUCUGCCGCUCCacgc -5'
28863 3' -51.7 NC_006146.1 + 6724 0.66 0.978906
Target:  5'- gGGUGGUGaAGACGGgGucuGGUGCu -3'
miRNA:   3'- -UCGUCAUcUCUGCCgCu--CCACGc -5'
28863 3' -51.7 NC_006146.1 + 12803 0.68 0.943984
Target:  5'- gGGCGgacGUAcGGACGGCGGcugccGGUGCGc -3'
miRNA:   3'- -UCGU---CAUcUCUGCCGCU-----CCACGC- -5'
28863 3' -51.7 NC_006146.1 + 14031 0.66 0.981183
Target:  5'- gGGCAG-GGAG-CaGGCGGGGgcagGCGc -3'
miRNA:   3'- -UCGUCaUCUCuG-CCGCUCCa---CGC- -5'
28863 3' -51.7 NC_006146.1 + 26991 0.67 0.964381
Target:  5'- cGGCAGgggcaacgaAGGGaACGGCGAGaGUGuCGa -3'
miRNA:   3'- -UCGUCa--------UCUC-UGCCGCUC-CAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 35882 0.68 0.934041
Target:  5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3'
miRNA:   3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 36505 0.72 0.770781
Target:  5'- cGGCAGgauagauGAGugGGUGAgGGUGCu -3'
miRNA:   3'- -UCGUCau-----CUCugCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 37881 1.06 0.008626
Target:  5'- gAGCAGUAGAGACGGCGAGGUGCGa -3'
miRNA:   3'- -UCGUCAUCUCUGCCGCUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 40066 0.7 0.897925
Target:  5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3'
miRNA:   3'- -UCGU---CAucUCUGCCGCUCCACgC- -5'
28863 3' -51.7 NC_006146.1 + 40269 0.68 0.934041
Target:  5'- cGUAGUAGGGA-GGCGcGG-GCGg -3'
miRNA:   3'- uCGUCAUCUCUgCCGCuCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 40875 0.68 0.952472
Target:  5'- cGCGGUccGGAGACGGagcCGGGGccucgucUGCGa -3'
miRNA:   3'- uCGUCA--UCUCUGCC---GCUCC-------ACGC- -5'
28863 3' -51.7 NC_006146.1 + 41295 0.68 0.934041
Target:  5'- cGGCGacGGAGACGGCgGAGGcaugGCGu -3'
miRNA:   3'- -UCGUcaUCUCUGCCG-CUCCa---CGC- -5'
28863 3' -51.7 NC_006146.1 + 42373 0.68 0.952893
Target:  5'- cGCcGccAGGGugGGCGAGGgGCGc -3'
miRNA:   3'- uCGuCa-UCUCugCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 43277 0.66 0.97643
Target:  5'- gGGCGGccUGGAGGucCGGC-AGGUGCc -3'
miRNA:   3'- -UCGUC--AUCUCU--GCCGcUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 43628 0.66 0.983272
Target:  5'- aGGgAGU--GGGCGGCGGGGcGUGg -3'
miRNA:   3'- -UCgUCAucUCUGCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 44019 0.7 0.868748
Target:  5'- cGGCGGggaGGGGGCGGCcGAGG-GCc -3'
miRNA:   3'- -UCGUCa--UCUCUGCCG-CUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 44535 0.7 0.860855
Target:  5'- gGGCGG-AG-GACGGUGGGGggcUGCGg -3'
miRNA:   3'- -UCGUCaUCuCUGCCGCUCC---ACGC- -5'
28863 3' -51.7 NC_006146.1 + 45056 0.74 0.688506
Target:  5'- cGGCucccUAGGGGCGGCuGAGGUGCc -3'
miRNA:   3'- -UCGuc--AUCUCUGCCG-CUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 48005 0.66 0.981183
Target:  5'- uGGUGGcgGGAGGCuuGGCGGGGgagGCa -3'
miRNA:   3'- -UCGUCa-UCUCUG--CCGCUCCa--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.