miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 170111 0.67 0.96773
Target:  5'- cGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 169180 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 168248 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 167863 0.67 0.96773
Target:  5'- cGGC-GUAGGGGCacgGAGGUGCGg -3'
miRNA:   3'- -UCGuCAUCUCUGccgCUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 167316 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 166988 0.66 0.983272
Target:  5'- gGGCAGUGGcuGGGCG-CGguugaAGGUGCa -3'
miRNA:   3'- -UCGUCAUC--UCUGCcGC-----UCCACGc -5'
28863 3' -51.7 NC_006146.1 + 166690 0.73 0.760861
Target:  5'- uGGCAGgggGGAGACGGgGcaaugggagggGGGUGUGa -3'
miRNA:   3'- -UCGUCa--UCUCUGCCgC-----------UCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 162605 0.66 0.981183
Target:  5'- cAGCuGUaugcaagacucGGAGGCGGUGGGGguaacgGCa -3'
miRNA:   3'- -UCGuCA-----------UCUCUGCCGCUCCa-----CGc -5'
28863 3' -51.7 NC_006146.1 + 151398 0.69 0.928677
Target:  5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3'
miRNA:   3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5'
28863 3' -51.7 NC_006146.1 + 140082 0.68 0.952893
Target:  5'- gGGUGGUGGAGGgGGUggaaGAGGgggugGCGg -3'
miRNA:   3'- -UCGUCAUCUCUgCCG----CUCCa----CGC- -5'
28863 3' -51.7 NC_006146.1 + 132984 0.83 0.249803
Target:  5'- gGGCGGUGGAGACcGCG-GGUGCGg -3'
miRNA:   3'- -UCGUCAUCUCUGcCGCuCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 128654 0.69 0.911008
Target:  5'- cGCAuucGGGGACGGCGGGGacggGCa -3'
miRNA:   3'- uCGUca-UCUCUGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 127474 0.72 0.809918
Target:  5'- cGCAGgcuacugauggacgaGGAGACGGCGGGGgucGCa -3'
miRNA:   3'- uCGUCa--------------UCUCUGCCGCUCCa--CGc -5'
28863 3' -51.7 NC_006146.1 + 126007 0.67 0.956968
Target:  5'- uGGgAGUGGGGGCGGUGGGcuucUGCu -3'
miRNA:   3'- -UCgUCAUCUCUGCCGCUCc---ACGc -5'
28863 3' -51.7 NC_006146.1 + 123088 0.66 0.97591
Target:  5'- uGGCAGcccgagcccauGAGACGGCGGuGG-GCGc -3'
miRNA:   3'- -UCGUCau---------CUCUGCCGCU-CCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 122967 0.82 0.289949
Target:  5'- cGCAGcgGGAGGCGGgGAGGUGCc -3'
miRNA:   3'- uCGUCa-UCUCUGCCgCUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 122604 0.68 0.952893
Target:  5'- cGaCGGUGGAG--GGCGAGGgGCGg -3'
miRNA:   3'- uC-GUCAUCUCugCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 115942 0.73 0.730392
Target:  5'- cAGCGGUAGcGGCGGCGGcGGUcGCc -3'
miRNA:   3'- -UCGUCAUCuCUGCCGCU-CCA-CGc -5'
28863 3' -51.7 NC_006146.1 + 115163 0.66 0.983272
Target:  5'- gGGCGGUGGAGAUcuugGGCGuGuacGCGg -3'
miRNA:   3'- -UCGUCAUCUCUG----CCGCuCca-CGC- -5'
28863 3' -51.7 NC_006146.1 + 113719 0.68 0.952893
Target:  5'- cGGCAGccGGGACGGUGAagucguggaaGGUaGCGg -3'
miRNA:   3'- -UCGUCauCUCUGCCGCU----------CCA-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.