Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28863 | 3' | -51.7 | NC_006146.1 | + | 37881 | 1.06 | 0.008626 |
Target: 5'- gAGCAGUAGAGACGGCGAGGUGCGa -3' miRNA: 3'- -UCGUCAUCUCUGCCGCUCCACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 132984 | 0.83 | 0.249803 |
Target: 5'- gGGCGGUGGAGACcGCG-GGUGCGg -3' miRNA: 3'- -UCGUCAUCUCUGcCGCuCCACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 122967 | 0.82 | 0.289949 |
Target: 5'- cGCAGcgGGAGGCGGgGAGGUGCc -3' miRNA: 3'- uCGUCa-UCUCUGCCgCUCCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 100010 | 0.81 | 0.351088 |
Target: 5'- gAGCGGgcacgucgGGAGGCGGCGGGGUccGCGg -3' miRNA: 3'- -UCGUCa-------UCUCUGCCGCUCCA--CGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 51466 | 0.77 | 0.508463 |
Target: 5'- gAGguGUGGAGAUgGGCGGGGgcUGCGg -3' miRNA: 3'- -UCguCAUCUCUG-CCGCUCC--ACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 77832 | 0.75 | 0.645793 |
Target: 5'- cGGCGGagggGGGGGCGGgGGGGUGgGa -3' miRNA: 3'- -UCGUCa---UCUCUGCCgCUCCACgC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 45056 | 0.74 | 0.688506 |
Target: 5'- cGGCucccUAGGGGCGGCuGAGGUGCc -3' miRNA: 3'- -UCGuc--AUCUCUGCCG-CUCCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 70962 | 0.73 | 0.720034 |
Target: 5'- uGCGGaGGAGGCGGgagcgGGGGUGCGa -3' miRNA: 3'- uCGUCaUCUCUGCCg----CUCCACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 75479 | 0.73 | 0.730392 |
Target: 5'- uGUGGUcacGGGGACGGCGGGGgccgGCa -3' miRNA: 3'- uCGUCA---UCUCUGCCGCUCCa---CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 115942 | 0.73 | 0.730392 |
Target: 5'- cAGCGGUAGcGGCGGCGGcGGUcGCc -3' miRNA: 3'- -UCGUCAUCuCUGCCGCU-CCA-CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 68270 | 0.73 | 0.750816 |
Target: 5'- cGCGGUGGAGG-GGCGGGGcguUGUGa -3' miRNA: 3'- uCGUCAUCUCUgCCGCUCC---ACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 166690 | 0.73 | 0.760861 |
Target: 5'- uGGCAGgggGGAGACGGgGcaaugggagggGGGUGUGa -3' miRNA: 3'- -UCGUCa--UCUCUGCCgC-----------UCCACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 36505 | 0.72 | 0.770781 |
Target: 5'- cGGCAGgauagauGAGugGGUGAgGGUGCu -3' miRNA: 3'- -UCGUCau-----CUCugCCGCU-CCACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 127474 | 0.72 | 0.809918 |
Target: 5'- cGCAGgcuacugauggacgaGGAGACGGCGGGGgucGCa -3' miRNA: 3'- uCGUCa--------------UCUCUGCCGCUCCa--CGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 51173 | 0.71 | 0.835841 |
Target: 5'- gGGCuGUGGAGcCGGgGAGGcUGCu -3' miRNA: 3'- -UCGuCAUCUCuGCCgCUCC-ACGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 44535 | 0.7 | 0.860855 |
Target: 5'- gGGCGG-AG-GACGGUGGGGggcUGCGg -3' miRNA: 3'- -UCGUCaUCuCUGCCGCUCC---ACGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 44019 | 0.7 | 0.868748 |
Target: 5'- cGGCGGggaGGGGGCGGCcGAGG-GCc -3' miRNA: 3'- -UCGUCa--UCUCUGCCG-CUCCaCGc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 6113 | 0.7 | 0.868748 |
Target: 5'- aGGCaacGGUGGAGGCGGUGGGGa--- -3' miRNA: 3'- -UCG---UCAUCUCUGCCGCUCCacgc -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 56838 | 0.7 | 0.891002 |
Target: 5'- aGGCGGccucuGGCGGCGGGG-GCGg -3' miRNA: 3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5' |
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28863 | 3' | -51.7 | NC_006146.1 | + | 90093 | 0.7 | 0.891002 |
Target: 5'- gAGCAGUGGAGGCaGCGgagcAGGagGCa -3' miRNA: 3'- -UCGUCAUCUCUGcCGC----UCCa-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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