miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 126007 0.67 0.956968
Target:  5'- uGGgAGUGGGGGCGGUGGGcuucUGCu -3'
miRNA:   3'- -UCgUCAUCUCUGCCGCUCc---ACGc -5'
28863 3' -51.7 NC_006146.1 + 40066 0.7 0.897925
Target:  5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3'
miRNA:   3'- -UCGU---CAucUCUGCCGCUCCACgC- -5'
28863 3' -51.7 NC_006146.1 + 2475 0.69 0.904595
Target:  5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3'
miRNA:   3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 151398 0.69 0.928677
Target:  5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3'
miRNA:   3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5'
28863 3' -51.7 NC_006146.1 + 41295 0.68 0.934041
Target:  5'- cGGCGacGGAGACGGCgGAGGcaugGCGu -3'
miRNA:   3'- -UCGUcaUCUCUGCCG-CUCCa---CGC- -5'
28863 3' -51.7 NC_006146.1 + 90640 0.68 0.939143
Target:  5'- gGGUGGUuugGGAGgcgccGCGGCGAGGgugGCa -3'
miRNA:   3'- -UCGUCA---UCUC-----UGCCGCUCCa--CGc -5'
28863 3' -51.7 NC_006146.1 + 90005 0.68 0.943512
Target:  5'- gAGCA--GGAGugGGUucgggaaGAGGUGCa -3'
miRNA:   3'- -UCGUcaUCUCugCCG-------CUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 91108 0.68 0.948567
Target:  5'- uGGCAGcGGAGGgaGGUGAgGGUGCc -3'
miRNA:   3'- -UCGUCaUCUCUg-CCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 113719 0.68 0.952893
Target:  5'- cGGCAGccGGGACGGUGAagucguggaaGGUaGCGg -3'
miRNA:   3'- -UCGUCauCUCUGCCGCU----------CCA-CGC- -5'
28863 3' -51.7 NC_006146.1 + 56838 0.7 0.891002
Target:  5'- aGGCGGccucuGGCGGCGGGG-GCGg -3'
miRNA:   3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 90093 0.7 0.891002
Target:  5'- gAGCAGUGGAGGCaGCGgagcAGGagGCa -3'
miRNA:   3'- -UCGUCAUCUCUGcCGC----UCCa-CGc -5'
28863 3' -51.7 NC_006146.1 + 44019 0.7 0.868748
Target:  5'- cGGCGGggaGGGGGCGGCcGAGG-GCc -3'
miRNA:   3'- -UCGUCa--UCUCUGCCG-CUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 122967 0.82 0.289949
Target:  5'- cGCAGcgGGAGGCGGgGAGGUGCc -3'
miRNA:   3'- uCGUCa-UCUCUGCCgCUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 51466 0.77 0.508463
Target:  5'- gAGguGUGGAGAUgGGCGGGGgcUGCGg -3'
miRNA:   3'- -UCguCAUCUCUG-CCGCUCC--ACGC- -5'
28863 3' -51.7 NC_006146.1 + 45056 0.74 0.688506
Target:  5'- cGGCucccUAGGGGCGGCuGAGGUGCc -3'
miRNA:   3'- -UCGuc--AUCUCUGCCG-CUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 68270 0.73 0.750816
Target:  5'- cGCGGUGGAGG-GGCGGGGcguUGUGa -3'
miRNA:   3'- uCGUCAUCUCUgCCGCUCC---ACGC- -5'
28863 3' -51.7 NC_006146.1 + 166690 0.73 0.760861
Target:  5'- uGGCAGgggGGAGACGGgGcaaugggagggGGGUGUGa -3'
miRNA:   3'- -UCGUCa--UCUCUGCCgC-----------UCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 36505 0.72 0.770781
Target:  5'- cGGCAGgauagauGAGugGGUGAgGGUGCu -3'
miRNA:   3'- -UCGUCau-----CUCugCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 51173 0.71 0.835841
Target:  5'- gGGCuGUGGAGcCGGgGAGGcUGCu -3'
miRNA:   3'- -UCGuCAUCUCuGCCgCUCC-ACGc -5'
28863 3' -51.7 NC_006146.1 + 44535 0.7 0.860855
Target:  5'- gGGCGG-AG-GACGGUGGGGggcUGCGg -3'
miRNA:   3'- -UCGUCaUCuCUGCCGCUCC---ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.